| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,612,211 – 2,612,267 |
| Length | 56 |
| Max. P | 0.552688 |
| Location | 2,612,211 – 2,612,267 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 75.50 |
| Shannon entropy | 0.50008 |
| G+C content | 0.41932 |
| Mean single sequence MFE | -12.79 |
| Consensus MFE | -7.34 |
| Energy contribution | -7.54 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2612211 56 + 23011544 AAAACUGUGCUAACGGUUAACAGAUACAGCGGGG-UUGCUGCUAACAUUUAACUAUA ..((((((....)))))).........(((((..-...))))).............. ( -10.40, z-score = -0.49, R) >droSim1.chr2L 2570648 57 + 22036055 AAAACUGUGCUAACGGUUAACAGAUACAGCGGGGGUUGCUGCUAACAUUUUACUAUA ..((((((....)))))).........(((((......))))).............. ( -10.60, z-score = -0.38, R) >droSec1.super_5 780495 57 + 5866729 AAAACUGUGCUAACGGUUAACAGAUACAGCGGGGGUAGCUGCUAACAUUUUACUAUA ..((((((....)))))).........(((((......))))).............. ( -10.60, z-score = -0.32, R) >droYak2.chr2L 2601331 56 + 22324452 AAAACUGUGCUAACGCUUAACAGAUGCAGCGGGG-UAACUGCUUACAUUGGGCUGUA ....((((((....))...)))).((((((...(-(((....)))).....)))))) ( -13.20, z-score = -0.20, R) >droEre2.scaffold_4929 2656775 56 + 26641161 AAAACUGUGCUAACGGUUAACAGAUGCAGCGGGG-UGACUGCUAACAUUUGACUGUA ..((((((....))))))..((((((.(((((..-...)))))..))))))...... ( -16.60, z-score = -2.42, R) >droAna3.scaffold_12913 431373 51 - 441482 AAAACUGUUCUAACGGUUAACAUUUCCAGAAGGAGUUUCUGUUAG--UUCAAC---- .....((..(((((((..(((...(((....)))))).)))))))--..))..---- ( -12.00, z-score = -2.09, R) >dp4.chr4_group4 1924471 53 + 6586962 AAAACUGUGCUAACGGUUAAGGCUGCCAGCGGGGAAGUUUAC--AUUUCCUGCAA-- ..((((((....))))))..........((((((((......--.))))))))..-- ( -16.10, z-score = -1.30, R) >consensus AAAACUGUGCUAACGGUUAACAGAUACAGCGGGG_UUGCUGCUAACAUUUUACUAUA ..((((((....)))))).........(((((......))))).............. ( -7.34 = -7.54 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:50 2011