| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,937,755 – 7,937,825 |
| Length | 70 |
| Max. P | 0.663467 |
| Location | 7,937,755 – 7,937,825 |
|---|---|
| Length | 70 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 87.44 |
| Shannon entropy | 0.19972 |
| G+C content | 0.50181 |
| Mean single sequence MFE | -17.12 |
| Consensus MFE | -13.81 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7937755 70 - 21146708 AAAAAGGGAAAUGGAAGAAGCGGUGAAGGAAGGGGAAACUCUCUUUUGCCAGCGGAAGAGCAGGAUGCAG ...................((((..(((((.(((....))))))))..)).((......)).....)).. ( -21.40, z-score = -3.50, R) >droSim1.chr2R 6474951 68 - 19596830 -AAAAGGGAAAUGGAUGGAGCGGUGAAGGUA-CGGAAACUCUCUUUUACCAGCGGAAGAGCGGGAUGUAG -..................((((((((((..-.(....)...))))))))..(....).))......... ( -15.40, z-score = -1.03, R) >droSec1.super_1 5487624 68 - 14215200 -AAAAGGGAAAUGGAAGGAGCGGUGAAGGAA-GGGAAACUCUCUUUUGCCAGCGGAAGAGCAGGAUGCAG -..................((((..(((((.-.(....)..)))))..)).((......)).....)).. ( -20.30, z-score = -2.83, R) >droYak2.chr2R 12124396 67 + 21139217 -GAGAAAGAAA-GGAAGGAGCGGUGAAGGAA-CGGAAUCUCUCUUUUGCCAGUGAAAGAGCAGGAUGCAG -..........-.......((((..(((((.-.........)))))..)).((......)).....)).. ( -11.40, z-score = 0.76, R) >consensus _AAAAGGGAAAUGGAAGGAGCGGUGAAGGAA_CGGAAACUCUCUUUUGCCAGCGGAAGAGCAGGAUGCAG ...................(((((((((((...(....)..))))))))).((......)).....)).. (-13.81 = -13.50 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:44 2011