| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,934,874 – 7,934,988 |
| Length | 114 |
| Max. P | 0.874131 |
| Location | 7,934,874 – 7,934,988 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.42 |
| Shannon entropy | 0.50091 |
| G+C content | 0.44139 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -16.77 |
| Energy contribution | -19.50 |
| Covariance contribution | 2.73 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7934874 114 + 21146708 CCCACCGGGAAAAAGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACAUUUGACAGCAGGACAUGACGUGGUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGGGGA-- .((.(((..(((.....((((((....(((.....)))...))))))........((((((.((((.(((..((((.....))))..))))))))).))))..)))..))))).-- ( -33.90, z-score = -2.28, R) >droSim1.chr2R 6472058 114 + 19596830 CCCGCCGGGAAAAUGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACAUUUGACAGCAGGACAUGACGUGGUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGGGGA-- .((.(((..(((.....((((((....(((.....)))...))))))........((((((.((((.(((..((((.....))))..))))))))).))))..)))..))))).-- ( -33.90, z-score = -1.64, R) >droSec1.super_1 5484742 114 + 14215200 CCUCCCGGGAAAAUGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACACUUGACAGCAGGACAUGACGUGGUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGGGGA-- ..((((.(((((((...((((((....(((.....)))...))))))........((((((.((((.(((..((((.....))))..))))))))).)))).))))))).))))-- ( -35.30, z-score = -2.29, R) >droYak2.chr2R 12121501 114 - 21139217 CCUCCCGGGGAAAAGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACAUUUGACAGCAGGACAUGACGUGCUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGAGGC-- (((....)))....(((.((...(((((.((((..(((.((((((((.......((((.(......).)))).(((.....))))))))))).))))))).)))))...)))))-- ( -29.40, z-score = -0.92, R) >droEre2.scaffold_4845 4727771 116 - 22589142 CUUCCCGGGGAAAGGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACAUUUGACAGCAGGACAUGUCGUGUUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGGGGUGG ..(((((..(((..((.((((((....(((.....)))...))))))....((((........))))(((..((((.....))))..))).........))..)))..)))))... ( -34.40, z-score = -1.95, R) >droPer1.super_4 5324613 93 - 7162766 ----------------CUCCCCUAUAUACCGUUCGAAACUAAAGCUAAGCU--CUGAAUUUCCGCUUAAGCUGACGAAUGUCAAAGUUCUUUCUAUACAGCUCUUUCUGCC----- ----------------.............((((((.......((((((((.--..........)))).))))..))))))...................((.......)).----- ( -11.70, z-score = 0.05, R) >consensus CCUCCCGGGAAAAAGCCGUCCAUAAAUCUCAAUUAGAGCAAAUGGACAUUUGACAGCAGGACAUGACGUGGUCGCAAAUAUUGCGUUCAUUUAUUCAUUGCGAUUUUUCGGGGA__ ....(((..(((.....((((((....(((.....)))...))))))........((((...((((.(((..((((.....))))..)))))))...))))..)))..)))..... (-16.77 = -19.50 + 2.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:39 2011