| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,921,379 – 7,921,475 |
| Length | 96 |
| Max. P | 0.985151 |
| Location | 7,921,379 – 7,921,475 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 58.78 |
| Shannon entropy | 0.80848 |
| G+C content | 0.41007 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -6.51 |
| Energy contribution | -7.95 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.65 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7921379 96 + 21146708 UGAAUAUUGAUAACAAAUGAACUAUCGAUAAGAGGCCGUCGAUAGUU--CACGGUGCAACAUCAACUCUCCCAUCACUAGUUCCAAUUGCAUUUUCUG .(((.............((((((((((((........))))))))))--)).(((((((....((((...........))))....)))))))))).. ( -21.10, z-score = -2.07, R) >droAna3.scaffold_13266 17180492 73 - 19884421 -----UGAAAAAAUGCCUAACGCGUUAGCCCCAAAUUGUUGAGUUUU----CCUCACAAU----GUCUGGCAACGCCAAAGUGCAA------------ -----........(((((...(((((.(((....(((((.(((....----.))))))))----....))))))))...)).))).------------ ( -21.50, z-score = -3.60, R) >droEre2.scaffold_4845 4714223 95 - 22589142 UGAAUUCUGGUAACCAAUGAACUAUCGAUAAGAGGUCGUCGAUAGUU--CAGGAUGCAACAUUAAUUCUUCCAUCACUAGUUCCAAUUGCAUU-UCUG .(((..(((((......((((((((((((........))))))))))--))(((...............)))...))))))))..........-.... ( -21.86, z-score = -1.82, R) >droYak2.chr2R 12107466 96 - 21139217 UGAAUUCUGAUAGCCAAUGAACUAUCGAUAAAAGGCUGUCGAUAGUU--CAGGGUGCAACAUCAAUUGUCCCACCACUAGUUCCAAUUGCAUUAUCUG ........(((((.((((((((((((((((......)))))))))))--)((((((..(((.....)))..)))).)).......))))..))))).. ( -28.10, z-score = -3.50, R) >droSec1.super_1 5471388 96 + 14215200 UGAAUAUUGAUAACAAAUGUGCUAUCGAUAAGAGGCCGUCGAUAGUU--CGCAGUACAACAUCAACUCUCCCAUCACUAGUUACAAUUGCAUUUUCUG ((...((((.((((...((((((((((((........))))))))).--.)))(.....)...................))))))))..))....... ( -15.10, z-score = 0.05, R) >droSim1.chr2R 6458543 96 + 19596830 UGAAUAUAGAUAACAAAAGGGCUAUCGAUAAGAGACCGUCGAUAGUU--CACAGUGCAACAUCAACUCUCCCAUCACUAGUUCCAAUUGCAUUUUCUG ......((((........(((((((((((........))))))))))--)..(((((((....((((...........))))....))))))).)))) ( -20.50, z-score = -2.16, R) >droVir3.scaffold_12875 12026951 83 - 20611582 ----AACAAAUCUUAAAUAAUACGGUAACACUGCGCUACGGGGUGUUGCCACUAUGCGCACGCAGCUUGGCAAC-----GCUUCAAUUGCAU------ ----..................(((.....))).((...((((((((((((...(((....)))...)))))))-----)))))....))..------ ( -25.70, z-score = -2.26, R) >consensus UGAAUACUGAUAACAAAUGAACUAUCGAUAAGAGGCCGUCGAUAGUU__CACGGUGCAACAUCAACUCUCCCAUCACUAGUUCCAAUUGCAUU_UCUG ...................((((((((((........)))))))))).....(((((((....(((.............)))....)))))))..... ( -6.51 = -7.95 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:39 2011