| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,900,164 – 7,900,265 |
| Length | 101 |
| Max. P | 0.546982 |
| Location | 7,900,164 – 7,900,265 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.16 |
| Shannon entropy | 0.56690 |
| G+C content | 0.44469 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7900164 101 - 21146708 --------------GGCCUCGUGUUGAGGCAGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCGUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUACCAAAUAGCUCCCCCCAC---- --------------.(((((.....)))))(((((((..(((..(((((.......)))))..))).))))((((.(((......))).))))...........)))........---- ( -28.90, z-score = -2.07, R) >droSim1.chr2R 6436936 101 - 19596830 --------------GGCCUCGUGUUGAGGCAGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCG-UUGCCUUUAAGCAGAAAAAUGCAUAAAUUUACCAAAUAGCUCCCCCCGCC--- --------------.(((((.....)))))(((((((..(((..(((((.......)))))..))-)))))((((.(((......))).))))...........))).........--- ( -28.30, z-score = -1.56, R) >droSec1.super_1 5450503 102 - 14215200 --------------GGCCUCGUGUUGAGGCAGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCGUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUACCAAAUAGCUCCCCCUGCC--- --------------.(((((.....)))))(((((((..(((..(((((.......)))))..))).))))((((.(((......))).))))...........))).........--- ( -28.90, z-score = -1.64, R) >droYak2.chr2R 12084985 102 + 21139217 --------------GGCCUCGGGCUGAGGCCGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCAGUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUACCAAAUAGCUCCCCAACAC--- --------------((((((.....))))))((((((....(..(((((.......)))))..)...))))((((.(((......))).))))...........))..........--- ( -27.60, z-score = -0.62, R) >droEre2.scaffold_4845 4693020 102 + 22589142 --------------GGCCUCGUGUUGAGGCCGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCAGUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUACCAAAUAGCUCACCAACGC--- --------------((((((.....))))))((((((....(..(((((.......)))))..)...))))((((.(((......))).))))...........))..........--- ( -27.60, z-score = -0.90, R) >droAna3.scaffold_13266 17157219 88 + 19884421 ---------------------------GGCCGCGGCCUUACGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGUUGCCCCCGG---- ---------------------------(((....)))....(..((((.((((.(((((..(((((((..((......))..))))))))))))..))))..))))..)......---- ( -19.50, z-score = -0.38, R) >dp4.chr3 13185405 92 + 19779522 -----------------------GUGGCGUGGCGGCCUCAUGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAACUCCGCGCUC---- -----------------------..(((((((.(((...(((..(((((.......)))))..)))..)))((((.(((......))).))))..............))))))).---- ( -26.00, z-score = -1.71, R) >droPer1.super_2 2221322 92 + 9036312 -----------------------GUGGCGUGGCGGCCUCAUGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAACUCCGCGCUC---- -----------------------..(((((((.(((...(((..(((((.......)))))..)))..)))((((.(((......))).))))..............))))))).---- ( -26.00, z-score = -1.71, R) >droWil1.scaffold_180700 5792855 87 - 6630534 --------------------------------CGGCAUUACGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGACCUCGCCUUCCAG --------------------------------.(((((((.((((.......)))).))))(((((((..((......))..))))))).....................)))...... ( -15.00, z-score = -0.51, R) >droVir3.scaffold_12875 12003508 118 + 20611582 CUUGUUGUGUUGCUGCUGGCCCUCGUCAGCGUCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCA-UUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGUUGUUGCCACAACC ...(((((((((((((((((....))))))...((((....(..(((((.......)))))..).-.))))....)))))...............((((((....)))))).)))))). ( -31.80, z-score = -0.88, R) >droMoj3.scaffold_6496 18595709 115 - 26866924 ---GUUCCUGUUCUUGUGCCCCUCGUCAGAGUCGGCGUCAUGUGAUUGAUGUUCAUUUAGUUGCA-UUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGUUGCUGCCCCUUGG ---((..(((((..((((((.(((....)))..)))((.(((..(((((.......)))))..))-).)).((((.(((......))).))))....))))))))..)).......... ( -26.50, z-score = -1.03, R) >droGri2.scaffold_15245 16308561 116 + 18325388 ---UCGCCCAACGUCAUCGUCAUCGUCUUCGUCGGCGUCGUGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGUCGUUGCCCCGCAA ---..((.(((((.(..................((((..(((..(((((.......)))))..))).))))((((.(((......))).))))...........).)))))....)).. ( -24.40, z-score = -0.40, R) >consensus ______________GGCCUCG_GCUGAGGCGGCGGCGUCACGUGAUUGAUGUUCAUUUAGUUGCAUUUGCCUUUAAGCAGAAAAAUGCAUAAAUUUAACAAACAGCUCCCCCCCCC___ .................................(((.....(..(((((.......)))))..)....)))((((.(((......))).)))).......................... (-12.10 = -12.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:37 2011