| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,894,924 – 7,895,041 |
| Length | 117 |
| Max. P | 0.804010 |
| Location | 7,894,924 – 7,895,041 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 81.38 |
| Shannon entropy | 0.34003 |
| G+C content | 0.45643 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -18.06 |
| Energy contribution | -17.76 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7894924 117 - 21146708 UUAGAACUUUAAGGAGCAGCAUCGCUCGGCAUCCGACAAUUAUCGCUCGGA-AUACAAAAGUAUCUCA--UUCACAUCGCCACAAUGG-GCUGCAGAUACACGAUUGCAGCUACAAGAUAU .............((((......))))(((.((((((.......).)))))-((((....))))....--........)))......(-(((((((........))))))))......... ( -27.90, z-score = -1.79, R) >dp4.chr3 13180343 107 + 19779522 UGAGAACUUUAAGGCGAACAAUCUCGCGGCGAUUGACAAUUAUCACGCUGAGAUACAAAAGUAUCUCGCUCUCUCAAUGCCACAAUGGAGCCUCAG---CGCCAUCGCAG----------- (((((........((((......))))((((..(((......)))))))(((((((....)))))))....))))).(((....((((.((....)---).)))).))).----------- ( -30.60, z-score = -2.03, R) >droPer1.super_2 2216220 107 + 9036312 UGAGAACUUUAAGGCGAACAAUCUCGCGGCGAUUGACAAUUAUCACGCUGAGAUACAAAAGUAUCUCGCUCUCUCAAUGCCACAAUGGAGCCCCAG---CGCCAUCGCAG----------- (((((........((((......))))((((..(((......)))))))(((((((....)))))))....))))).(((....((((.((....)---).)))).))).----------- ( -30.60, z-score = -2.19, R) >droSim1.chr2R 6431398 117 - 19596830 UUAGAACUUUAAGGAGCAGCAUCGCUCGGUAUCCGACAAUUAUCGCUCGGA-AUACAAAAGUAUCUCA--UUCACAUCGCCACAAUGG-GCUGCAAAUACACGAUUGCAGCUACAAGAUAU ..((((((((...((((......)))).(((((((((.......).)))).-)))).))))).)))..--.....(((.((.....))-(((((((........))))))).....))).. ( -28.30, z-score = -2.32, R) >droSec1.super_1 5445285 117 - 14215200 UUAGAACUUUAAGGAGCAGCAUCGCUCGGCAUCCGACAAUUAUCGCUCGGA-AUACAAAAGUAUCUCA--UUCACAUCGCCACAAUGG-GCUGCAGAUACACGAUUGCAGCUACAAGAUAU .............((((......))))(((.((((((.......).)))))-((((....))))....--........)))......(-(((((((........))))))))......... ( -27.90, z-score = -1.79, R) >droYak2.chr2R 12079769 117 + 21139217 UUAGAACUUUAAGGAGCAGCAUCGCUUGGCAUCCGACAAUUAUCGCUCCGA-AUACAAAAGUAUCUCA--UUCACAUCGGCACAAUGG-GCUGCAGAUACACGAUUGCAGCUCCGAGAUAU ............(((((.((........))....((......)))))))..-........(((((((.--.((.....))......((-(((((((........))))))).))))))))) ( -28.60, z-score = -1.22, R) >droEre2.scaffold_4845 4687900 117 + 22589142 UUAGAACUUUAAGGAGCAGCAUCGCUCGGCAUCCGACAAUUAUCGCUCCGA-AUACAAAAGUAUCUCA--UUCACAUCGCCACAAUGG-GCUGCAGUUACACGAUUGCAGCUACAAGAUAU ...(((......(((((.((...))((((...))))........)))))((-((((....)))).)).--)))..(((.((.....))-(((((((((....))))))))).....))).. ( -29.60, z-score = -2.43, R) >consensus UUAGAACUUUAAGGAGCAGCAUCGCUCGGCAUCCGACAAUUAUCGCUCGGA_AUACAAAAGUAUCUCA__UUCACAUCGCCACAAUGG_GCUGCAGAUACACGAUUGCAGCUACAAGAUAU .............((((......))))(((...(((......)))....((.((((....)))).))...........)))........(((((((........))))))).......... (-18.06 = -17.76 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:34 2011