| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,889,132 – 7,889,224 |
| Length | 92 |
| Max. P | 0.779992 |
| Location | 7,889,132 – 7,889,224 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 70.84 |
| Shannon entropy | 0.52798 |
| G+C content | 0.31404 |
| Mean single sequence MFE | -15.84 |
| Consensus MFE | -9.58 |
| Energy contribution | -8.91 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7889132 92 + 21146708 -UGUGUGUUAUUUAUAUUUAAUGCUAAACUUAAAAUUUGGCUUAGUUUCU-CAAUGUUUGAAAACAAUGAAAUCGCUCGUUGUUUUGUGUGAUG----- -..........((((((((((.((((((.......)))))))))).....-.........((((((((((......))))))))))))))))..----- ( -14.30, z-score = -0.82, R) >droSim1.chr2R 6425714 92 + 19596830 -UGUGUGUGAUUUAUAUUUAAUGCUAAACUUAAAAUUUGGCUUAGUUUCU-CAAUGUUUGAAAACAAUGAAAUCGCUCGUUGUUUUGUGUGAUG----- -..........((((((((((.((((((.......)))))))))).....-.........((((((((((......))))))))))))))))..----- ( -14.30, z-score = -0.63, R) >droSec1.super_1 5439568 92 + 14215200 -UGUGUGUGAUUUAUAUUUAAUGCUAAACUUAAAAUUUGGCUUAGUUUCU-CAAUGUUUGAAAACAAUGAAAUCGCUCGUUGUUUUGUGUGAUG----- -..........((((((((((.((((((.......)))))))))).....-.........((((((((((......))))))))))))))))..----- ( -14.30, z-score = -0.63, R) >droYak2.chr2R 12073993 91 - 21139217 GUG-GUGUGAUUUAUAUUUAAUGCUAAACUUAAAAUUUGGCUUAGUUUAU-CAAUGUUCGAAAACAAUGAAAUCGCUCGUUGUUU-GUGUGAUG----- ...-...((((......((((.((((((.......))))))))))...))-))....(((.(((((((((......)))))))))-...)))..----- ( -15.30, z-score = -0.68, R) >droEre2.scaffold_4845 4682161 92 - 22589142 -GGGGUGUGAUUUAUAUUUAAUGCUAAACUUAAAUUUUGGCUUAGUUCUUGCUAGGUUGGAAAACAAUGAAUUCGCUCGUUGUUU-GUGUGAUA----- -.(((((.(((((((.(((((........)))))(((..(((((((....)))))))..)))....)))))))))))).......-........----- ( -20.60, z-score = -2.15, R) >dp4.chr3 13175608 96 - 19779522 -GAUGCGUUUUCCAAUGCUAAAACUAAA-UUAAAAUUUGGCUUAGUUUUCCUUUCCUUUCGGCAUUCGAAAA-CCUUUGAAAAUCCGCGAUACUCGUAU -.....((((((.(((((..(((..(((-..((((((......))))))..)))..)))..))))).)))))-)............(((.....))).. ( -17.10, z-score = -1.51, R) >droPer1.super_2 2211469 97 - 9036312 -GAUGCGUUUUCCAAUGCUAAAACUAAA-UUAAAAUUUGGCUUAGUUUUCCUUUCCUUUCGGCAUUUGAAAAACCUUUGAAAAUCUGCGAUACUCGUAU -......(((((.(((((..(((..(((-..((((((......))))))..)))..)))..))))).))))).............((((.....)))). ( -15.00, z-score = -0.93, R) >consensus _UGUGUGUGAUUUAUAUUUAAUGCUAAACUUAAAAUUUGGCUUAGUUUCU_CAAUGUUUGAAAACAAUGAAAUCGCUCGUUGUUUUGUGUGAUG_____ .................((((.((((((.......))))))))))...............((((((((((......))))))))))............. ( -9.58 = -8.91 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:33 2011