| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,885,958 – 7,886,054 |
| Length | 96 |
| Max. P | 0.630860 |
| Location | 7,885,958 – 7,886,054 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.12 |
| Shannon entropy | 0.51198 |
| G+C content | 0.44992 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.15 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7885958 96 + 21146708 --------------CCUCCCACUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA-CGCUC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGCGAGCUC --------------................((((((...........(((((((.(((((...-.....--))))).-------)))))))....(((((.......))))))))))).. ( -24.60, z-score = -2.05, R) >droSim1.chr2R 6422586 96 + 19596830 --------------CCUCCCGCUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA-CGCUC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGCGAGCUC --------------......((......))((((((...........(((((((.(((((...-.....--))))).-------)))))))....(((((.......))))))))))).. ( -26.60, z-score = -2.13, R) >droSec1.super_1 5436475 96 + 14215200 --------------CCUCCCGCUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA-CGCUC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGCGAGCUC --------------......((......))((((((...........(((((((.(((((...-.....--))))).-------)))))))....(((((.......))))))))))).. ( -26.60, z-score = -2.13, R) >droYak2.chr2R 12070746 96 - 21139217 --------------CCUUCUGCUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA-CGCUC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGCGAGCUC --------------......((......))((((((...........(((((((.(((((...-.....--))))).-------)))))))....(((((.......))))))))))).. ( -26.30, z-score = -1.98, R) >droEre2.scaffold_4845 4678982 96 - 22589142 --------------CCUCCUGCUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA-CGCUC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGCGAGCUC --------------......((......))((((((...........(((((((.(((((...-.....--))))).-------)))))))....(((((.......))))))))))).. ( -26.30, z-score = -2.12, R) >droAna3.scaffold_13266 17133645 110 - 19884421 UGGCUCCCGGUUUUGUUGCCGCCCCCUCUGGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCGA-CGCCC--GGCGUU-------GAAAAUGAAAAUUGUUACUCCACAACAAGUCACCAA ........((((((((((..(((......)))..((((((((((...(((((((.(((((.(.-...).--))))).-------))))))))))))).))))....)))))))..))).. ( -28.60, z-score = -1.07, R) >dp4.chr3 13172445 95 - 19779522 --------------CCUCUUGCUUAGCUCGACUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUG-CGCUU--GGCGUUUGGCGUUGAAAAUGAAAAUUGUUACUCCACAAUGA-------- --------------....................((((((((((...(((((((.(((((..(-(((..--.))))..))))).))))))))))))).))))..........-------- ( -22.10, z-score = -1.03, R) >droPer1.super_2 2208299 95 - 9036312 --------------CCUCUUGCUUAGCUCGGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUG-CGCUU--GGCGUUUGGCGUUGAAAAUGAAAAUUGUUACUCCACAAUGA-------- --------------......(((......)))..((((((((((...(((((((.(((((..(-(((..--.))))..))))).))))))))))))).))))..........-------- ( -23.50, z-score = -0.86, R) >droWil1.scaffold_180700 818201 85 - 6630534 --------------UCUGCUACU-GACUCGGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCGG-CAUUU--GGCGUU-------GAAAAUGAAAAUUGUUACUCUCUCUC---------- --------------...(((...-.....)))..((((((((((...(((((((.(((((...-.....--))))).-------))))))))))))).))))........---------- ( -17.30, z-score = -1.05, R) >droVir3.scaffold_12875 11980362 81 - 20611582 ------------------------------GCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCGAACGUUUU-GGCGUU-------GAAAAUGAAAAUUGUUACUACACGAUGGCAAAAAC- ------------------------------((((((..((((((...(((((((.(((((.((....)).-))))).-------)))))))))))))((....))))))..))......- ( -16.90, z-score = -0.31, R) >droMoj3.scaffold_6496 18569732 77 + 26866924 ------------------------------GCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCGU-CGCUG-UGGCGUU-------GAAAAUGAAAAUUGUUGCCACACGCCGAACAC---- ------------------------------(.(((...........((((.....))))....-.((((-(((((..-------...(((....)))..))))))).))))).)..---- ( -19.30, z-score = -0.45, R) >droGri2.scaffold_15245 16289348 78 - 18325388 ------------------------------GCUCGUAAAAUUUUAUGCGUUUUUUGCGCCAGU-CGUUUCUGGCGUU-------CAAAAUGAAAAUUGUUACUACACGUCGAACUG---- ------------------------------....((((((((((...((((((..(((((((.-.....))))))).-------.)))))))))))).))))..............---- ( -19.50, z-score = -2.00, R) >consensus ______________CCUCCUGCUUAGCUGCGCUCGUAAAAUUUUAUGCGUUUUUUGCGCCCUA_CGCUC__GGCGUU_______GAAAAUGAAAAUUGUUACUCCACAACAAGCGA_C__ ..................................((((((((((...(((((((.(((((...........)))))........))))))))))))).)))).................. (-11.14 = -11.15 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:32 2011