| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,875,256 – 7,875,351 |
| Length | 95 |
| Max. P | 0.515074 |
| Location | 7,875,256 – 7,875,351 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.33 |
| Shannon entropy | 0.33718 |
| G+C content | 0.26657 |
| Mean single sequence MFE | -14.19 |
| Consensus MFE | -9.06 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7875256 95 - 21146708 -----UUGGCCAUUAUCGCAAUGUAUCAGAUAAGAUGCAUUCAAUUAUUAAAAUCGCCUAAAAA-AAUAAUUAAAUACAUUACACGUGAAAAGUAUUAGAC- -----..........((((((((((((......)))))))).(((((((...............-))))))).............))))............- ( -11.66, z-score = -0.38, R) >droSim1.chr2R 6411745 97 - 19596830 UGAAAUUGGCCACUAUCAUAAUGUAUCAGAUAAGAUACAAUCAAUUAUUAAGAGUGCCUAAAAACAAUUAUUUAAUACAUUACACUU----AGUAUUAGAC- .....((((.((((...((((((((((......)))))).....))))....)))).)))).........((((((((.........----.)))))))).- ( -15.10, z-score = -1.76, R) >droSec1.super_1 5425892 82 - 14215200 UGAAAUUGGCCACUAUCAUAAUGUAUCAGAUAAGAUACAUUCAAUUAUUAAGAG----------------UUUAAUACGUUACACUU----AGUAUUAGACA ...((((((...........(((((((......))))))))))))).......(----------------((((((((.........----.))))))))). ( -15.80, z-score = -2.53, R) >consensus UGAAAUUGGCCACUAUCAUAAUGUAUCAGAUAAGAUACAUUCAAUUAUUAAGAG_GCCUAAAAA_AAU_AUUUAAUACAUUACACUU____AGUAUUAGAC_ ...................((((((((......)))))))).............................((((((((..............)))))))).. ( -9.06 = -9.51 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:32 2011