| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,853,448 – 7,853,552 |
| Length | 104 |
| Max. P | 0.668542 |
| Location | 7,853,448 – 7,853,552 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 85.61 |
| Shannon entropy | 0.22006 |
| G+C content | 0.64290 |
| Mean single sequence MFE | -46.55 |
| Consensus MFE | -34.76 |
| Energy contribution | -35.95 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7853448 104 - 21146708 CUAACCGCAGUUGCAUUGUUUGCGGCUGGAGUGGUGGCCAGUGGUGGGGCCAUCGUUGGCCCACCGCCUCCUCUGGCCUUUCCCCCAGCCACUCCUGUUGCGCC------------ .....((((((((((.....)))))))((((((((((((((.((((((((((....)))))..)))))....)))))).........))))))))....)))..------------ ( -53.00, z-score = -3.74, R) >droSim1.chr2R 6391202 104 - 19596830 CUAACCGCAGUUGCAUUGUUUGCGGCUAGACUGGUGGCCAGUGGUGGGGCCAUCGUUGGCCCACCGCCUCCUCGGGCCUUUCCCCCAGCCACUCCUGUUGCGCU------------ .....((((((((((.....))))))).(((.((((((..((((((((.(((....)))))))))))......(((.......))).))))))...))))))..------------ ( -45.40, z-score = -1.66, R) >droSec1.super_1 5405087 104 - 14215200 CUAACCGCAGUUGCAUUGUUUGCGGCUGGACUGGUGGCCAGUGGUGGGGCCAUCGUUGCCACACCGCCUCCUCGGGCCUUUCCCCCAGCCACUCCUGUUGCGCU------------ .....(((((..(((.....)))((((((...((.((((.((((((.(((.......))).)))))).......))))...)).)))))).......)))))..------------ ( -41.60, z-score = -0.50, R) >droYak2.chr2R 12039354 116 + 21139217 CUGGCCGCAGUUGCAUUGUUUGCCGCUGGGCUGGCGGCCAGUGCUGGGGACAUUGUUGGCCCACUGCCUCCUCUGAUCUUUCCCCCAGCAACUCCUGUUGCUCCUGGUCCCGAACC ..((((.((((.(((.....))).))))))))((.((((((....(((((((..(..(((.....)))..)..)).....))))).((((((....)))))).))))))))..... ( -46.20, z-score = -1.46, R) >consensus CUAACCGCAGUUGCAUUGUUUGCGGCUGGACUGGUGGCCAGUGGUGGGGCCAUCGUUGGCCCACCGCCUCCUCGGGCCUUUCCCCCAGCCACUCCUGUUGCGCC____________ .....(((((..(((.....)))((((((...((((((((..((((....))))..)))).))))(((......))).......)))))).......))))).............. (-34.76 = -35.95 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:31 2011