| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,846,421 – 7,846,520 |
| Length | 99 |
| Max. P | 0.863044 |
| Location | 7,846,421 – 7,846,520 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 93.43 |
| Shannon entropy | 0.11698 |
| G+C content | 0.40165 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -21.68 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7846421 99 + 21146708 ACAUUUUCAGCCUGUUUUUAUUCAGUUUUAUUUUUUUCCUUCGUCGGCUUGCCGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACACUGUCAUU .....(((((((((........))).................(.(((....))))....)))))).....(((((.(((((....)))))))))).... ( -23.30, z-score = -2.58, R) >droSim1.chr2R 6384182 98 + 19596830 ACAUUUUCAGCCUGUUUUUAUUCAGUUUUAUUUUUU-CCUUCGACGGGCUGCCGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACACUGUCAUU .......(((((((((....................-.....)))))))))..((....)).........(((((.(((((....)))))))))).... ( -23.91, z-score = -1.97, R) >droSec1.super_1 5398135 98 + 14215200 ACAUUUUCAGCCUGUUUUUAUUCAGUUUUAUUUUUU-CCUUCGACGGGCUGCCGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACACUGUCAUU .......(((((((((....................-.....)))))))))..((....)).........(((((.(((((....)))))))))).... ( -23.91, z-score = -1.97, R) >droYak2.chr2R 12032293 99 - 21139217 ACAUUUUCAGCCUGUUUUUAUUCAGUUGUAUUUUUUUCCUUCAAGGGGCUGCUGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACACUGUCAUU .......(((.((((..(((((((((.(((.......(((....)))((....))))).)))))))))..))))..(((((....))))).)))..... ( -25.40, z-score = -1.51, R) >droEre2.scaffold_4845 4639957 99 - 22589142 ACAUUUUCAGCCUGUUUUUAUUCAGUUUUAUGUUUUCCUUCAAGGGGGCUGCUGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACUCUGUCAUU .......(((.((((..(((((((((..((.((..((((.....))))..))...))..)))))))))..)))).((((((....)))))))))..... ( -26.20, z-score = -1.54, R) >consensus ACAUUUUCAGCCUGUUUUUAUUCAGUUUUAUUUUUU_CCUUCGACGGGCUGCCGCUAUUGCUGAGUAACCGCAGUAGUUGCAAAAGCAACACUGUCAUU .......(((.((((..(((((((((..((.......(((.....))).......))..)))))))))..))))..(((((....))))).)))..... (-21.68 = -21.72 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:30 2011