| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,840,620 – 7,840,716 |
| Length | 96 |
| Max. P | 0.575809 |
| Location | 7,840,620 – 7,840,716 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 86.03 |
| Shannon entropy | 0.26034 |
| G+C content | 0.46327 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -20.93 |
| Energy contribution | -21.77 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7840620 96 - 21146708 AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGGCUUGCAACAC-------GUGCACGGUGCACUACCGAAGAUGAGA .......(((....((((((((((((((((((..(((....))))))))).........))))))))).-------((((.....))))....)))....))) ( -26.00, z-score = -1.26, R) >droSim1.chr2R 6378406 96 - 19596830 AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGGCUUGCAACAC-------GUGCACGGUGCACCACCGAAGAUGAGA ......((((.......(((((((((((((((..(((....))))))))).........))))))))).-------.....(((((...))))).)))).... ( -25.90, z-score = -1.15, R) >droSec1.super_1 5392411 96 - 14215200 AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGGCUUGCAACAC-------GUGCACGGUGCACCGCCGAAGAUGAGA .......(((....((((((((((((((((((..(((....))))))))).........))))))))).-------((((.....))))....)))....))) ( -25.60, z-score = -0.79, R) >droYak2.chr2R 12026556 96 + 21139217 AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGCCUUGCAACAC-------GUGCACGGUGCACCACCGAAGAUGAGA ......((((.......(((((((((((((((..(((....))))))))).........))))))))).-------.....(((((...))))).)))).... ( -25.90, z-score = -1.59, R) >droEre2.scaffold_4845 4634281 103 + 22589142 AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGCCUUGCAACACGUGCACGGUGCACGGUGCACCACCGAAGAUGAGA .......(((....((((((((((((((((((..(((....))))))))).........))))))))).((((((.(....).))))))....)))....))) ( -31.40, z-score = -1.92, R) >droAna3.scaffold_13266 8680812 102 - 19884421 AUUAAAGUCUAUUAUUCCGUUGCAAGAUCUCUAAUGGUGCCCCAUUGGGUCUCAU-UGGCUUGCAACACGUGCAGCACCGCAACCAUCCAACCGAAGAAGAUG ......((((....(((.((((((((....((((((..((((....))))..)))-)))))))))))...(((......)))...........)))..)))). ( -28.50, z-score = -2.17, R) >consensus AUUAAAGUCUAUUAUUCUGUUGCAAGAUCCGUAAUGGAGCCCCAAUGGAUUAAGUCUGGCUUGCAACAC_______GUGCACGGUGCACCACCGAAGAUGAGA ......((((........((((((((((((((..(((....))))))))).........))))))))..............(((((...))))).)))).... (-20.93 = -21.77 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:29 2011