| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,820,718 – 7,820,822 |
| Length | 104 |
| Max. P | 0.896317 |
| Location | 7,820,718 – 7,820,822 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 95.50 |
| Shannon entropy | 0.06181 |
| G+C content | 0.55486 |
| Mean single sequence MFE | -39.57 |
| Consensus MFE | -39.60 |
| Energy contribution | -39.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7820718 104 + 21146708 GUAUUCAAAUAGACCGCAGACGGCAGACGGCUGCCGUUGGAUGGAGCUGCAAAGGUGCUACAGUGGUGCCAUUGGUGGUGCUAUUGUUGGUGCUGCUCAACCAC ..................((((((((....))))))))((...((((......((..(((((((((..(((....)))..)))))).)))..))))))..)).. ( -40.80, z-score = -1.63, R) >droEre2.scaffold_4845 4614825 103 - 22589142 GUAUUCAAAUAGACCGCAGACGGCAGACGGCUGCCGUUGGAUGGAGCUGCAAAGGUGCUACAGUGGUGCCAU-AGUGGUGCUAUUGGUGGUGCUGCUCAACCAC ..................((((((((....))))))))((...((((......((..(((((((((..((..-...))..))))).))))..))))))..)).. ( -39.90, z-score = -1.40, R) >droYak2.chr2R 12006805 103 - 21139217 GUAUUCAAAUAGACCGCAGACGGCAGACGGCUGCCGUUGGAUAGAGCUGCGAAGGUGCUACAGAGGUGCCAC-AGUGGUGCUAUUGGUGGUGCUGCUCAACCAC .........((((((((.((((((((....)))))))).(((((.((..(...((..((.....))..))..-.)..)).))))).))))).)))......... ( -38.00, z-score = -1.12, R) >consensus GUAUUCAAAUAGACCGCAGACGGCAGACGGCUGCCGUUGGAUGGAGCUGCAAAGGUGCUACAGUGGUGCCAU_AGUGGUGCUAUUGGUGGUGCUGCUCAACCAC ..................((((((((....))))))))((...((((......((..(((((((((..(((....)))..)))))).)))..))))))..)).. (-39.60 = -39.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:27 2011