| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,814,258 – 7,814,350 |
| Length | 92 |
| Max. P | 0.985549 |
| Location | 7,814,258 – 7,814,350 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 67.98 |
| Shannon entropy | 0.61358 |
| G+C content | 0.56387 |
| Mean single sequence MFE | -32.39 |
| Consensus MFE | -20.26 |
| Energy contribution | -21.51 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7814258 92 - 21146708 GACACAACAACGUGUGCCCGCAGUACACGUCUCGGGGGGGGGGAUUC-------------CUGGGGCGGGGUAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....))))))))(((....)))((((...-------------((((((((((...((....))..))))))))))))))..)))... ( -35.30, z-score = -0.75, R) >droAna3.scaffold_13266 8655442 104 - 19884421 GACACAACAAGAAAAGCCCGCAGUACACGUAUAAUAUAAUGGGGCCUGGUCGCAGGAGGGAUGGGGGAGGGAAACACGUGU-ACCUGCCUAGUUCUCAGGUGAAU ..(((....((((......(((((((((((..............(((.(((.(....).))).)))...(....)))))))-).))))....))))...)))... ( -30.40, z-score = -0.72, R) >droEre2.scaffold_4845 4607808 88 + 22589142 GACACAACAACGUGUGCCCGCAGUACACGUAUCG----GGGGGAUUC-------------UUGGGGCGGGGGAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....))))))))....----..(((((..-------------.(((((((((...((....))..))))))))))))))..)))... ( -34.10, z-score = -1.73, R) >droYak2.chr2R 12000228 88 + 21139217 GACACAACAACGUGUGCCCGCAGUACACGUAUUG----GGGGGAUUC-------------CUGGGGCGGGGGAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....))))))))....----..((((...-------------((((((((((...((....))..))))))))))))))..)))... ( -35.30, z-score = -1.75, R) >droSec1.super_1 5365950 89 - 14215200 GACACAACAACGUGUGCCCGCAGUACACGUCUCGG---GGGGGAUUC-------------CUGGGGCGGGGUAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....)))))))).....---..((((...-------------((((((((((...((....))..))))))))))))))..)))... ( -34.70, z-score = -1.24, R) >droSim1.chr2R 6351797 88 - 19596830 GACACAACAACGUGUGCCCGCAGUACACGUCUCG----GGGAGAUGC-------------CUGGGGCGGGGUAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....))))))))....----..((((...-------------((((((((((...((....))..))))))))))))))..)))... ( -35.60, z-score = -1.67, R) >droMoj3.scaffold_6496 3332636 76 - 26866924 -----GACCUGCUUAGCCCGCAGUACGCAGUACGCAGUACAAGACUAGAC------GUGUCUUAGCCAGGC---UAUUUGUCAUUUAUUA--------------- -----(((.....(((((.((.((((((.....)).))))(((((.....------..))))).))..)))---))...)))........--------------- ( -21.30, z-score = -1.69, R) >consensus GACACAACAACGUGUGCCCGCAGUACACGUAUCG____GGGGGAUUC_____________CUGGGGCGGGGUAACACGUGUAACCUGCCUCAGUCUCAGGUGAAU ..(((....((((((((.....))))))))..............................((((((((((...((....))..))))))))))......)))... (-20.26 = -21.51 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:26 2011