| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,727,222 – 7,727,324 |
| Length | 102 |
| Max. P | 0.698954 |
| Location | 7,727,222 – 7,727,324 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 62.43 |
| Shannon entropy | 0.63233 |
| G+C content | 0.42043 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -13.96 |
| Energy contribution | -13.52 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.52 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7727222 102 - 21146708 ---------------ACAAACUUAGAA---AAAACUCGUAGCAGAUCUACGGUUAUCUAAGUUAUUGAAAGUAUAUAAUUUUUCGCUGUGCGGCUGAUGUUUUGGUCCCAUUGGGGGUGG ---------------...((((((((.---..(((.(((((.....)))))))).))))))))..................(((.(.(((.(((..(....)..))).))).).)))... ( -22.70, z-score = -0.50, R) >droSim1.chr2R 6260304 85 - 19596830 ----------------------UAGAA---AUAACCCAUGG---AUCUAGG-------AAGUAAUUGAGAGUAUAUUAUUUUUCCCUGUGCGGCUGAUGUUUUGGUCUCAUGGGGGGUGG ----------------------.....---...((((....---.....((-------(((((((.........))))))))).((((((.(((..(....)..))).)))))))))).. ( -21.90, z-score = -0.54, R) >droSec1.super_1 5279015 85 - 14215200 ----------------------UAGAA---AUAACCCAUGG---AUCUAGG-------AAGUAAUUGAGAGUAUAUUAUUUUUCCCUGUGCGGCUGAUGUUUUGGUCUCAUAGGGGGUGG ----------------------.....---...((((....---.....((-------(((((((.........))))))))).((((((.(((..(....)..))).)))))))))).. ( -23.20, z-score = -1.17, R) >droYak2.chr2R 11914734 117 + 21139217 AGUGAACUUAAACCAUUUUUCCCAGCAUCCACAACUUAUAG-GUAUCAAUAGAUCUGCCAGCAAUUGGGAGUGUGU--UUUCUUUCUGUGCUGGUGAUGUUUUGGUCUCAUUGGGGGUGG ............................((((..((.((..-(.(((((.(.(((.(((((((...(..((.....--...))..)..)))))))))).).))))))..)).))..)))) ( -31.80, z-score = -0.57, R) >droEre2.scaffold_4845 4521580 114 + 22589142 AGUGAACUAAAAACUCUCUUUCUAGGCUCCACAGCAUAUAG----UCCAUCGAUUUGCCAGUAAUUCGGAGAAUAG--UUUCUUUCAGUGCGGCUGAUGUUUCGGUCUCAUUGGGGGUGG ...((((((.....((((...(((.(((....)))...)))----.....(((.(((....))).))))))).)))--)))((..(((((.((((((....)))))).)))))..))... ( -29.30, z-score = -0.56, R) >consensus ______________________UAGAA___ACAACCCAUAG___AUCUAGGG_U_U__AAGUAAUUGAGAGUAUAU_AUUUUUCCCUGUGCGGCUGAUGUUUUGGUCUCAUUGGGGGUGG .................................((((.............................(((((........)))))((((((.((((((....)))))).)))))))))).. (-13.96 = -13.52 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:21 2011