| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,717,986 – 7,718,111 |
| Length | 125 |
| Max. P | 0.500000 |
| Location | 7,717,986 – 7,718,111 |
|---|---|
| Length | 125 |
| Sequences | 6 |
| Columns | 153 |
| Reading direction | forward |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.54458 |
| G+C content | 0.41936 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -16.00 |
| Energy contribution | -18.12 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 7717986 125 + 21146708 GGAAUUGCUGACAUCGGUACCCUGAAUCCCACUUACAUGGCCUUU---GGGUAACCCGAUAUGCAGGCAGAUCGCAUCAGUAGUUCACUCCAAAAA--GUUUCGGAAUAUAUUCUUAUUUAAUUAAAUGU----------------------- .((((((((((.((((((((((.(((..(((......)))..)))---)))))..)))))......((.....)).))))))))))..(((.....--.....)))........................----------------------- ( -29.70, z-score = -1.03, R) >droSim1.chr2R 6245763 125 + 19596830 GGAAUUGCUGACAUCGAUUCCCUGUAUCCCACUUACAUGGCCUUU---GGGUAACCCGAUAUGCAGGCAGAUCGCAUCAGUAGUUCACUCCAAAAA--GUUUCGGAAUAUAUUCUUAUUUAAUUAAAUGC----------------------- .((((((((((...(((((.(((((((.(((......)))...((---(((...))))).)))))))..)))))..))))))))))..(((.....--.....)))........................----------------------- ( -31.40, z-score = -1.93, R) >droSec1.super_1 5270006 125 + 14215200 GGAAUUGCUGACAUCGGUUCCCUGGAUCCCACUUACAUGGCCUUU---GGGUAACCCGAUAUGCAGGCAGAUCGCAUCAGUAGUUCACUCCAAAAA--GUUUCGGAAUAUAUUCUUAUUUAAUUAAAUGC----------------------- .((((((((((....((((.((..((..(((......)))..)).---.)).))))((((.((....)).))))..))))))))))..(((.....--.....)))........................----------------------- ( -30.70, z-score = -0.87, R) >droEre2.scaffold_4845 4510453 147 - 22589142 GGAAUCGCUGACACCGGUUCCCUGGAUGCCACUUACAUGGCACUU---GGGUAACCCGAUAUUCGGG-AGAUCGCAUCAGUAGUUCACUCCAAAAA--CUUUUCAGACAAACUCUUAUUUAAUUAAAUGGCGAAUAUUCCCUAGUGUAAUGGC .((((..((((...((((..(((((((((((......))))..((---(((...))))).)))))))-..))))..))))..))))...(((...(--((....(((.....))).............((.((....)))).)))....))). ( -35.80, z-score = -0.47, R) >droYak2.chr2R 11905169 143 - 21139217 GGAAUUGCUGACACGGGUUCCUUGGAUACCACUUACAUGGCCUUU---GGGUAACCCGAUAUUCAGGGAGAUCGCAUCAGUAGUGCACUCCGAAAACUGUGUGGACAUAUAUGCAUAUUCAAUUGAAUGAUAAAUAUUCUCUGUAC------- (((((((((((..((..((((((((((((((......)))...((---(((...))))))))))))))))..))..))))))))....))).......(((..((...((((...(((((....)))))....))))..))..)))------- ( -40.50, z-score = -1.57, R) >droAna3.scaffold_13266 6696246 135 - 19884421 GAAAUUGCUGACACAAUUCCCCAAGCCUCCAUUACCAGUGCCCCCCAAGAGACAUUCGAUAUUCCCAACGAUCGAAUCGGUUGUACACUUAAACAU--CUAAAGUGCAAGAAAGUUUCCCAUUUAUAUUCCAAAUUU---------------- (((...((((.........................)))).........(((((.(((..........(((((((...))))))).(((((......--...)))))...))).))))).........))).......---------------- ( -15.51, z-score = 0.09, R) >consensus GGAAUUGCUGACACCGGUUCCCUGGAUCCCACUUACAUGGCCUUU___GGGUAACCCGAUAUGCAGGCAGAUCGCAUCAGUAGUUCACUCCAAAAA__GUUUCGGAAUAUAUUCUUAUUUAAUUAAAUGC_______________________ .((((((((((...((((..(((((((.(((......)))........(((...)))...)))))))...))))..))))))))))................................................................... (-16.00 = -18.12 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:18 2011