| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,689,152 – 7,689,210 |
| Length | 58 |
| Max. P | 0.780940 |
| Location | 7,689,152 – 7,689,210 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 83.08 |
| Shannon entropy | 0.30311 |
| G+C content | 0.43669 |
| Mean single sequence MFE | -16.18 |
| Consensus MFE | -9.03 |
| Energy contribution | -9.70 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7689152 58 + 21146708 GGCGAGUGUUAACGUAUACCCAUUAAAUGGGAUACCGAAAGGCGUAAACAAGUGACGG-------- ..((..((((.(((....(((((...)))))...((....))))).))))..))....-------- ( -15.70, z-score = -1.92, R) >droWil1.scaffold_181009 3308193 66 - 3585778 GGAGCCUGUUGCAAUUUAACCAUUAAAUGUUUAAGCGCAAAGUGUAAACAAGUGACUUCAACUCGA .(((...((..(.(((((.....)))))(((((.((.....)).)))))..)..)).....))).. ( -10.80, z-score = 0.01, R) >droEre2.scaffold_4845 4481694 58 - 22589142 GAGGAGUGUUAACGUAUACCCAUUAAAUGGUAUACCGAAAGGCGUAAACAAGUGACGG-------- ......((((.(((((((((........))))))((....))))).))))........-------- ( -13.20, z-score = -1.50, R) >droYak2.chr2R 11874737 58 - 21139217 GUCGAGUGUUAACGUAUACCCAUUAAAUGGGAUACCGAAAGGCGUAAACAAGUGACGG-------- ((((..((((.(((....(((((...)))))...((....))))).))))..))))..-------- ( -20.70, z-score = -4.04, R) >droSec1.super_1 5241119 58 + 14215200 GACGAGUGUUAACGUAUACCCAUUAAAUGGGAUACCGAAAGGCGUAAACAAGUGACGG-------- ..((..((((.(((....(((((...)))))...((....))))).))))..))....-------- ( -16.00, z-score = -2.57, R) >droSim1.chr2R 6216901 58 + 19596830 GUCGAGUGUUAACGUAUACCCAUUAAAUGGGAUACCGAAAGGCGUAAACAAGUGACGG-------- ((((..((((.(((....(((((...)))))...((....))))).))))..))))..-------- ( -20.70, z-score = -4.04, R) >consensus GACGAGUGUUAACGUAUACCCAUUAAAUGGGAUACCGAAAGGCGUAAACAAGUGACGG________ (.((..((((.((((...(((((...)))))....(....))))).))))..)).).......... ( -9.03 = -9.70 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:17 2011