| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,665,660 – 7,665,733 |
| Length | 73 |
| Max. P | 0.707553 |
| Location | 7,665,660 – 7,665,733 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.50814 |
| G+C content | 0.44409 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -10.06 |
| Energy contribution | -11.33 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7665660 73 + 21146708 ---UGCCGAUGGCCAAAUACUAGAGACG--AGUGUGUAGGAUUACGGGCUACCACUAACUGUAAUUUCAGUUAGCUGG ---.(((..(((((..(((((.......--)))))...)).)))..)))..((((((((((......))))))).))) ( -20.50, z-score = -1.46, R) >droSim1.chr2R 6193068 73 + 19596830 ---UGCCGAUGGCCAAAUACUAGAGACG--AGUGUGUAGGAUUACGGGCUACCACUAACUGUAAUUUCAGUUAGCUGG ---.(((..(((((..(((((.......--)))))...)).)))..)))..((((((((((......))))))).))) ( -20.50, z-score = -1.46, R) >droSec1.super_1 5217766 73 + 14215200 ---UGCCGAUGGCCAAAUACUAGAGACG--AGUGUGUAGGAUUACGGGCUACCACUAACUGUAAUUUCAGUUAGCUGG ---.(((..(((((..(((((.......--)))))...)).)))..)))..((((((((((......))))))).))) ( -20.50, z-score = -1.46, R) >droYak2.chr2R 11850793 73 - 21139217 ---UACCGAUGGCCAAAUACUAGAGACG--AGUGUGUAGGAUUACGGGCUACCACUAACAGAAAUUUCAGUUAGCUAG ---....(.(((((.(((.(((.(.(..--..).).))).)))...))))).).(((((.((....)).))))).... ( -12.80, z-score = 0.23, R) >droEre2.scaffold_4845 4458826 73 - 22589142 ---UACCGAUGGCCCAAUGCUAGAGACG--AGUGUGUAGGAUUACGGGCUACCACUAACUGAAAUUUCAGUUAGCUGG ---......(((((((((.(((.(.(..--..).).))).)))..))))))(((((((((((....)))))))).))) ( -25.30, z-score = -3.32, R) >droAna3.scaffold_13266 6646218 76 - 19884421 --UGUUCGAUGGCCAAAUACUAGAGUUGGGAGUGUCUAGGAUUACGGGAACUCACUAACUGUAAUUUCAGUUAGCUGG --..................((.((((((((((.(((.(.....).))))))).)))))).))....(((....))). ( -16.10, z-score = 0.17, R) >droVir3.scaffold_12875 15391399 64 - 20611582 UCAUUUCGAUAACUGA---UUGAAAACG--AAUUUCACGAACUUUGAACUUUGUACUAUGGGAACCUGG--------- ...(((((((.....)---))))))(((--((.((((.......)))).))))).(((.(....).)))--------- ( -8.70, z-score = -0.83, R) >consensus ___UGCCGAUGGCCAAAUACUAGAGACG__AGUGUGUAGGAUUACGGGCUACCACUAACUGUAAUUUCAGUUAGCUGG .....(((....((..(((((.........)))))...))....)))....((((((((((......))))))).))) (-10.06 = -11.33 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:10 2011