| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,665,132 – 7,665,204 |
| Length | 72 |
| Max. P | 0.634197 |
| Location | 7,665,132 – 7,665,204 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 87.27 |
| Shannon entropy | 0.22027 |
| G+C content | 0.46941 |
| Mean single sequence MFE | -17.78 |
| Consensus MFE | -11.54 |
| Energy contribution | -12.86 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7665132 72 + 21146708 CGGCCUCGAUGAGCUGAGCUGAGCUGUGAUUACACAGCCUAAUUAAAAUACCACCUCGAUAAUUGGGCUGAA (((((.((((....((((.((.((((((....)))))).............)).))))...))))))))).. ( -20.04, z-score = -2.43, R) >droSim1.chr2R 6192537 72 + 19596830 CGGCCUCGAUGAGCUGAGCUGAGCUGUGAUUACACAGCCUAAUUAAAAUACCACCUCGAUAAUUGGGCUGAA (((((.((((....((((.((.((((((....)))))).............)).))))...))))))))).. ( -20.04, z-score = -2.43, R) >droSec1.super_1 5217235 72 + 14215200 CGGCCUCGAUGAGCUGAGCUGAGCUGUGAUUACACCGCCUAAUUAAAAUACCACCUCGAUAAUUGGGCUGAA (((((.((((....((((.((.....((((((.......))))))......)).))))...))))))))).. ( -15.70, z-score = -0.97, R) >droYak2.chr2R 11850217 67 - 21139217 CGGCCUCGAUGAUCUGAGCUG-----UGAUUACACAGCCUAAUUAAAAUACCACCCCGAUAAUUGGACUGAA .((......((((..(.((((-----((....)))))))..)))).....))...((((...))))...... ( -12.30, z-score = -1.79, R) >droEre2.scaffold_4845 4458322 64 - 22589142 CGGCCUCGAUGAUCACGA--------UGAUAACGCGGCCUAAUUAAAAUACCAGCUCGAUAAUUGGGCUGAA .((((.((...(((....--------.)))..)).))))............((((((((...)))))))).. ( -20.80, z-score = -3.38, R) >consensus CGGCCUCGAUGAGCUGAGCUGAGCUGUGAUUACACAGCCUAAUUAAAAUACCACCUCGAUAAUUGGGCUGAA ((((.(((......))))))).............(((((((((((..............))))))))))).. (-11.54 = -12.86 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:09 2011