| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,650,256 – 7,650,353 |
| Length | 97 |
| Max. P | 0.920598 |
| Location | 7,650,256 – 7,650,353 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Shannon entropy | 0.16722 |
| G+C content | 0.44124 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -25.57 |
| Energy contribution | -25.85 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7650256 97 - 21146708 GAGUUGUUGGCCAGCUAUAUGGCUAUAUAGC--------UACACAUAUAGCCAAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGGCAUAUUAA ((..((((.(((((((((.(((((((((...--------.....)))))))))..((..(.....)..)).....))))))))).))))....)).......... ( -30.70, z-score = -2.38, R) >droSim1.chr2R 6177346 105 - 19596830 GAGUUGUUGGCCAGCUAUAUGGCUAUAUAGCUAUAUAGCUACACAUAUGGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGGCAUAUUAA ...((((..(((((((((((((((....)))))))))))).......(((.(((...((....))...))).)))..)))..))))................... ( -36.00, z-score = -2.67, R) >droSec1.super_1 5202567 105 - 14215200 GAGUUGUUUGCCAGCUAUAUGGCUAUAUAGCUAUAUAGUUACACAUAUGGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGGCAUAUUAA ((..((((((((((((((((((((....)))))))))......(((.(((.(((...((....))...))).)))))))))))))))))....)).......... ( -35.60, z-score = -3.21, R) >droYak2.chr2R 11835133 99 + 21139217 GAGUUGUUGGCCAGCUAUAUGGCUAUAUCGCCA------UACACAUAUAGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGGCAUAUUAA ((..((((.(((((((((.(((((((((.....------.....)))))))))..((..(.....)..)).....))))))))).))))....)).......... ( -28.90, z-score = -1.37, R) >droEre2.scaffold_4845 4443201 104 + 22589142 GAGUUGUUGGCCAGCUAUAUGGCCAUCUCGCUGUAUAGCUGCACAUAUAG-CGAGGAUCCAAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGACAUAUUAA ((..((((.(((((((((..(((...((((((((((........))))))-))))((..(.....)..)))))..))))))))).))))....)).......... ( -37.30, z-score = -2.99, R) >consensus GAGUUGUUGGCCAGCUAUAUGGCUAUAUAGCUAUAUAG_UACACAUAUAGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCAAAUAUUUAUCGGCAUAUUAA ((..((((.(((((((((.(((((((((................)))))))))..((..(.....)..)).....))))))))).))))....)).......... (-25.57 = -25.85 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:07 2011