| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,649,246 – 7,649,347 |
| Length | 101 |
| Max. P | 0.580214 |
| Location | 7,649,246 – 7,649,347 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 65.23 |
| Shannon entropy | 0.69004 |
| G+C content | 0.54487 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -11.44 |
| Energy contribution | -11.73 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7649246 101 - 21146708 -CCCCGCCCCCCUUUUACCAACAAGCUGGUUGA-CCCAAUUAGCC-GGGCAUUAUAAAGUCGUAAAGCAUAUUG-CCAGACGUGA----------GCGGGUUGGGGCUGGGGAAU- -(((((((((......((((......)))).((-(((........-.((((.(((...((......))))).))-)).(.(....----------)))))))))))).))))...- ( -35.90, z-score = -0.86, R) >droSim1.chr2R 6176271 105 - 19596830 -CCCCGCCCCCCUGUUCCCAACGAGCUGGUUGACCCCAAUUAGCC-GGGCAUUAUAAAGUCGUAAAGCAUAUUGCCCAGACGUGA---------GGCGGGUUGGGGCUGGGGGAAU -((((((((((((((..(..(((.((((((((....)))))))).-(((((.(((...((......))))).)))))...)))).---------.)))))..))))).)))).... ( -46.10, z-score = -2.13, R) >droSec1.super_1 5201502 101 - 14215200 -CCCCGCCCCCCUGUUCCCAACGAGCUGGUUGA-CCCAAUUAGCC-GGGCAUUAUAAAGUCGUAAAGCAUAUUG-CCAGACGUGA----------GCGGGUUGGGGCUGGGGAAU- -((((((((((((((((.(..((.((((((((.-..)))))))))-)((((.(((...((......))))).))-))....).))----------)))))..))))).))))...- ( -44.00, z-score = -2.78, R) >droYak2.chr2R 11834109 100 + 21139217 -CCCCGCCCCCUUUGC-CCAACGAGCUGGUUGA-CCCAAUUAGCC-GGGCAUUAUAAAGUCGUAAAGCAUAUUG-CCAGACGUGA----------GCGGGUUGGGGCUGGGGAAU- -(((((((((....((-((..((.((((((((.-..)))))))))-)((((.(((...((......))))).))-)).(.(....----------)))))).))))).))))...- ( -41.50, z-score = -2.13, R) >droEre2.scaffold_4845 4442172 100 + 22589142 GCACCGCCCCCCUGC--CCAACGAGCUGGUUGA-CCCAAUUAGCC-GGGCAUUAUAAAGUCGUAAAGCAUAUUG-CCAGACGUGA----------GCGGGUUGGGGCUGGGGAAU- ...((((((((((((--.((.((.((((((((.-..)))))))))-)((((.(((...((......))))).))-)).....)).----------)))))..))))).)).....- ( -36.80, z-score = -0.60, R) >droAna3.scaffold_13266 6630257 108 + 19884421 -----ACCCACCCGUCCCAGCCAGGUCGGUUGA-CCCAAUUAGCC-GAGCAUUAUAAAGUCGUAAAGCAUAUUG-CGCGACGUGAGCGGGACGGGACGGGACGGGGCUGGGGGAAU -----.(((.((((((((..((.(.((((((((-.....))))))-)).)........(((.....((.....)-).((.(....))).))).))..))))))))....))).... ( -46.50, z-score = -2.40, R) >dp4.chr3 16922539 89 - 19779522 --------------------CACCGAUGUUUGA-CCCAAUUAUCG-GGGCAUUAUAAAGUCGUAAAGCGUAC---CGGAGCGGGGGAGACGU-GUGUGCGGUGUGGUGCGGGGAU- --------------------..((((((.(((.-..))).)))))-).((((((((...(((((..((((.(---(.......))...))))-...)))))))))))))......- ( -26.70, z-score = -0.13, R) >droPer1.super_31 99988 89 + 935084 --------------------CACCGAUGUUUGA-CCCAAUUAUCG-GGGCAUUAUAAAGUCGUAAAGCGUAC---CGGAACGGGGGAAACGU-GUGUGCGGUGCGGUGCGGGGAU- --------------------..((((((.(((.-..))).)))))-)............(((((...(((((---((..(((.((....).)-.))).))))))).)))))....- ( -27.50, z-score = -0.25, R) >droMoj3.scaffold_6496 24848640 87 - 26866924 -----UUCCGUCACCUUCAAUCGCGUUGGCUGA-CCCAAUUAACA-GGGCAUUAUAAAGUCGUAAAGCA-UA---GCAGACGUG-----------------UGAUGCCAGAAAAU- -----....((((((..(......)..)).)))-)..........-.(((((((((..(((((......-..---)).))).))-----------------))))))).......- ( -19.40, z-score = -0.73, R) >droGri2.scaffold_15112 4916097 89 + 5172618 -----CUUCAUCACCUUCAGUGGUAUUGGUUGA-CCCAAUUAACAGGGGCAUUAUAAAGUCGUAAGGCAUUU---GGAGACGUG-----------------UGAUGCCAGAAAAU- -----.(((....(((...((...(((((....-.)))))..)))))(((((((((..(((....)))....---(....).))-----------------))))))).)))...- ( -25.80, z-score = -2.01, R) >consensus _____GCCCCCCUGUU_CCAACGAGCUGGUUGA_CCCAAUUAGCC_GGGCAUUAUAAAGUCGUAAAGCAUAUUG_CCAGACGUGA__________GCGGGUUGGGGCUGGGGAAU_ ........((((............((((((((....))))))))....((.((((......)))).))..................................)))).......... (-11.44 = -11.73 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:06 2011