| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,634,513 – 7,634,605 |
| Length | 92 |
| Max. P | 0.715071 |
| Location | 7,634,513 – 7,634,605 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 87.56 |
| Shannon entropy | 0.22415 |
| G+C content | 0.47335 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -24.52 |
| Energy contribution | -24.92 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7634513 92 + 21146708 UUGGCGUCAAUGGGAUUGAUUGCU--------UGUUGGCAAGUGCAUUGCGUAAGACGUUCUCUCCCAGUGGAAUCGCUGACGCCAGAGAAAAAACUAUU (((((((((.(((((..((.((((--------((...((((.....)))).)))).)).))..)))))(((....))))))))))))............. ( -30.50, z-score = -2.26, R) >droSim1.chr2R 6160836 100 + 19596830 UUGGCGUCAAUGGGAUUGUUUGCUGGUUUGUUUGUUGGCAAGUGCAUUGCGUAAGACGUUCUCUCCCAGUGGAAUCGCUGACGCCAUAGGAAAAACUAUC .((((((((..(.(((..((..((((...(..((((.((((.....))))....))))..)....))))..))))).)))))))))(((......))).. ( -31.70, z-score = -1.81, R) >droSec1.super_1 5186466 100 + 14215200 UUGGCGUCAAUGGGAUUGUUUGCUGGUUUGUUUGUUGGUAAGUGCAUUGCGUAAGAUGUUCUCUCCCAGUGGAAUCGCUGACGCCAUAGGAAAAACUAUC .((((((((.(((((....(((((..(......)..)))))(.(((((......))))).)..)))))(((....)))))))))))(((......))).. ( -29.30, z-score = -1.66, R) >droYak2.chr2R 11818914 98 - 21139217 UUGGCGUCAAUGGGAUUGUUUGCUGGGUUGUUUGCUGGCAAGUGCAUUGCGUAAGACAGUCUC--CCAGUGGAAUCGCUGACGCCACAGAAAAAACUAUC .((((((((..(.(((..((..(((((((((((....((((.....))))...))))))...)--))))..))))).))))))))).............. ( -34.90, z-score = -2.42, R) >droEre2.scaffold_4845 4426832 96 - 22589142 UUGGCGUCAAUGGGUUUGUUUGCUGGGUUAU-UGUUGGCAAGUGCAUUGCGUAAGACGUGCUC--CAAGUGGUUGCGCUGACGCCAUAG-AAAAACUACC .((((((((....((((...(((...((..(-((....)))..))...)))..))))((((.(--(....))..))))))))))))...-.......... ( -29.20, z-score = -0.41, R) >consensus UUGGCGUCAAUGGGAUUGUUUGCUGGGUUGUUUGUUGGCAAGUGCAUUGCGUAAGACGUUCUCUCCCAGUGGAAUCGCUGACGCCAUAGAAAAAACUAUC .((((((((..(.((((..(..((((......((((.((((.....))))....)))).......))))..))))).))))))))).............. (-24.52 = -24.92 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:03 2011