| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,631,561 – 7,631,611 |
| Length | 50 |
| Max. P | 0.998762 |
| Location | 7,631,561 – 7,631,611 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 86.42 |
| Shannon entropy | 0.18038 |
| G+C content | 0.38714 |
| Mean single sequence MFE | -10.57 |
| Consensus MFE | -10.47 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7631561 50 + 21146708 ------UUAUUUGUUUCGUGAAAAGGUGUCCUGGCUUAUUGACUGCGCCAGGAUUA ------.....................((((((((...........)))))))).. ( -12.60, z-score = -1.60, R) >droSim1.chr2R 6157434 50 + 19596830 ------UUUUUUGUUUCGUGAAAAGGUGUCCUGGCUUAUUGACUGCGCCAGGAUUA ------.....................((((((((...........)))))))).. ( -12.60, z-score = -1.58, R) >droYak2.chr2R 11816003 56 - 21139217 GUUUUUUUUUUUUUUUUGUAAAAAGGUGUCCUAGCUUAUUGACUGCGCCAGGAUUA ......(((((((......))))))).(((((.((...........)).))))).. ( -6.50, z-score = 0.49, R) >consensus ______UUUUUUGUUUCGUGAAAAGGUGUCCUGGCUUAUUGACUGCGCCAGGAUUA ...........................((((((((...........)))))))).. (-10.47 = -10.80 + 0.33)
| Location | 7,631,561 – 7,631,611 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 86.42 |
| Shannon entropy | 0.18038 |
| G+C content | 0.38714 |
| Mean single sequence MFE | -11.73 |
| Consensus MFE | -11.95 |
| Energy contribution | -11.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.35 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.48 |
| SVM RNA-class probability | 0.998762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7631561 50 - 21146708 UAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUCACGAAACAAAUAA------ ...(((((((...........)))))))......................------ ( -12.50, z-score = -3.58, R) >droSim1.chr2R 6157434 50 - 19596830 UAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUCACGAAACAAAAAA------ ...(((((((...........)))))))......................------ ( -12.50, z-score = -3.50, R) >droYak2.chr2R 11816003 56 + 21139217 UAAUCCUGGCGCAGUCAAUAAGCUAGGACACCUUUUUACAAAAAAAAAAAAAAAAC ...(((((((...........)))))))............................ ( -10.20, z-score = -2.96, R) >consensus UAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUCACGAAACAAAAAA______ ...(((((((...........)))))))............................ (-11.95 = -11.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:02 2011