| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,626,717 – 7,626,811 |
| Length | 94 |
| Max. P | 0.943608 |
| Location | 7,626,717 – 7,626,811 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 90.44 |
| Shannon entropy | 0.12700 |
| G+C content | 0.65552 |
| Mean single sequence MFE | -42.20 |
| Consensus MFE | -36.87 |
| Energy contribution | -37.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7626717 94 - 21146708 GUCUGUUGGCCAGGGGACUGGCCAUCGGCAACGGGACGGGGGAACGGGAACUGUCAACGCCGAGAGACCCAGGCCCAGUCCCAGUGCGCCAGUC ....(.(((((((....))))))).)(((.(((((((..(((...(((..((.((......)).)).)))...))).))))).))..))).... ( -46.60, z-score = -2.12, R) >droSec1.super_1 5178645 84 - 14215200 GUCUGUUGGCCAGGGGACUGGCCAUCGGCAACUGGA-ACGGGAACGGGAACUGUCAACGCCGAGAGACCCAGGCCCAGUCCCAGU--------- (.(((.(((((((....))))))).)))).(((((.-(((((...(((..((.((......)).)).)))...))).)).)))))--------- ( -40.00, z-score = -2.36, R) >droSim1.chr2R 6152638 84 - 19596830 GUCUGUUGGCCAGGGGACUGGCCAUCGGCAACUGGA-ACGGGAACGGGAACUGUCAACGCCGAGAGACCCAGGCCCAGUCCCAGU--------- (.(((.(((((((....))))))).)))).(((((.-(((((...(((..((.((......)).)).)))...))).)).)))))--------- ( -40.00, z-score = -2.36, R) >consensus GUCUGUUGGCCAGGGGACUGGCCAUCGGCAACUGGA_ACGGGAACGGGAACUGUCAACGCCGAGAGACCCAGGCCCAGUCCCAGU_________ (.(((.(((((((....))))))).)))).(((((....(((...(((..((.((......)).)).)))...)))....)))))......... (-36.87 = -37.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:01 2011