| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,612,148 – 7,612,246 |
| Length | 98 |
| Max. P | 0.840547 |
| Location | 7,612,148 – 7,612,246 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 62.38 |
| Shannon entropy | 0.62577 |
| G+C content | 0.50041 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -9.36 |
| Energy contribution | -9.93 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7612148 98 + 21146708 GGUCACAAAACGGACGCGUUCCAAAUCGCGUCGCCCAACAAGUAUUAAUAGCAAUAGU----AGCAACAGCAAUAUCCCUGACAAAAUCAGCAGACACAACA .(((........((((((........))))))((................((......----.))..(((........))).........)).)))...... ( -17.60, z-score = -1.86, R) >droSim1.chr2R 6136151 98 + 19596830 GGUCACAAAACGGACGCGUUCCAAAUCGCGUCGCCCAACAAGUAUUAAUAGCAAUAGU----AGCAACAGCAAUAUCCCUGACAAAAUCAGCAGACACAACA .(((........((((((........))))))((................((......----.))..(((........))).........)).)))...... ( -17.60, z-score = -1.86, R) >droAna3.scaffold_13266 6594929 89 - 19884421 GGGCACAAAACGCGCGCGACAGAAACCGCGUCGCCCAUCAAGUAUUAAUAGCGAUAGUUC-UACAAACCCCAAGACCCCCAUCAGUCCCA------------ (((.((.....(((((((........)))).))).....((.((((......)))).)).-.......................))))).------------ ( -16.80, z-score = -1.53, R) >dp4.chr3 16888754 101 + 19779522 GGGCACGAAACGCGUGCGUGGAAGGCCGCGUCGCCCUGCA-GCAUCUUCGGCAGCAACCAGUAUUACUAGCGAUAGUUCUUCUAUAGCCCACAACAGCAACA (((((((.....)))..(((((((..(..(((((..(((.-((.......)).)))...((.....)).))))).)..))))))).))))............ ( -28.90, z-score = 0.16, R) >consensus GGGCACAAAACGCACGCGUUCCAAACCGCGUCGCCCAACAAGUAUUAAUAGCAAUAGU____AGCAACAGCAAUAUCCCUGACAAAACCAGCAGACACAACA ((((.(.....)((((((........)))))))))).................................................................. ( -9.36 = -9.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:58 2011