| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,604,379 – 7,604,439 |
| Length | 60 |
| Max. P | 0.556579 |
| Location | 7,604,379 – 7,604,439 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 88.28 |
| Shannon entropy | 0.19924 |
| G+C content | 0.43593 |
| Mean single sequence MFE | -6.35 |
| Consensus MFE | -5.41 |
| Energy contribution | -5.81 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7604379 60 - 21146708 --UUUUGCUCGGUGUGUCCACCCCC-UUUUUAUCCCUAUACCGACUAUACUAUACCGCUUUAU --......((((((((.........-..........))))))))................... ( -6.91, z-score = -1.87, R) >droSim1.chr2R 6128469 59 - 19596830 --UUUUGCUCGGUGUGUCCACCCCCUUUUUUAUUCCUAUACCGACUAUA--AUACCGCUUUAU --......((((((((....................)))))))).....--............ ( -6.85, z-score = -1.92, R) >droSec1.super_1 5156378 59 - 14215200 --UUUUGCUCGGUGUGUCCACCCCCUUUUUUAUCCUUAUACCGACUAUA--AUACCGCUUUAU --......((((((((....................)))))))).....--............ ( -7.65, z-score = -2.39, R) >droYak2.chr2R 11788250 60 + 21139217 UUUUUGGCUCGGUGUGACCACCCCC-UUUUUCUGCCUAUUCCGACUAUA--AUACCGCUUUAU .....(((..((((....))))...-.......))).............--............ ( -5.90, z-score = 0.11, R) >droEre2.scaffold_4845 4396700 58 + 22589142 -UUUUUGCUCGGUGUGACCACCCCC-UUUUCCC-CCUAUUCCGACUACA--AUACCGCUUUAU -........((((((..........-.......-...............--))))))...... ( -4.45, z-score = -0.60, R) >consensus __UUUUGCUCGGUGUGUCCACCCCC_UUUUUAUCCCUAUACCGACUAUA__AUACCGCUUUAU ........((((((((....................))))))))................... ( -5.41 = -5.81 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:57 2011