| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,591,635 – 7,591,733 |
| Length | 98 |
| Max. P | 0.681290 |
| Location | 7,591,635 – 7,591,733 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.94 |
| Shannon entropy | 0.56285 |
| G+C content | 0.49395 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -13.88 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7591635 98 - 21146708 ----AAGUACGAGGAAAUGCACUCGGUUACGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC-UGGAUGAGCCGCCUUUACAGACUCUGC ----(((((((((........)))((((((((.((....)).)))))))).....))))))..((((((..((((-(.....)))))......)))))).... ( -33.10, z-score = -2.15, R) >droPer1.super_31 55648 99 + 935084 ----GGCUACGGGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGUAGUAGUAGAUGGUCUGACCGACCAGACCGCGA ----.((.......((((((....((((((((.((....)).)))))))).....))))))..((((((((.....(((.....)))....)))))))))).. ( -35.20, z-score = -2.03, R) >dp4.chr3 16872452 99 - 19779522 ----GGCUACGGGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGUAGUAGUAGAUGGCCUGACCGACCAGACCGCGA ----.((.......((((((....((((((((.((....)).)))))))).....))))))..((((((((.....(((.....)))....)))))))))).. ( -34.60, z-score = -1.59, R) >droAna3.scaffold_13266 6575406 94 + 19884421 ----AAGUACGAGGAAAUGCACUCGGCUGCGUGUAAAAAUAGGCGUAACCCUUCGGUAUUUAUGGUCUGGCUGCA-UGUACGA----UCUCAGGGGUCUCCAC ----(((((((((........)))((.(((((.((....)).))))).)).....)))))).(((...((((.(.-((.....----...))).)))).))). ( -22.90, z-score = 0.63, R) >droEre2.scaffold_4845 4382721 98 + 22589142 ----AAGUACGAGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC-UGGAUGAGCCGACUAUACAGAAUCUGC ----(((((((((........)))((((((((.((....)).)))))))).....))))))...((.(((.((((-(.....))))).))).))......... ( -30.50, z-score = -1.76, R) >droYak2.chr2R 11775080 98 + 21139217 ----AAGUACGAGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC-UGGAUGAGCCGACUUUGCAGACUCUGC ----(((((((((........)))((((((((.((....)).)))))))).....))))))..(((((((.((((-(.....))))).)....)))))).... ( -32.30, z-score = -1.74, R) >droSec1.super_1 5143868 98 - 14215200 ----AAGUACGAGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC-UGGAUGAGCCGCCUUUGCAGACUCUGA ----(((((((((........)))((((((((.((....)).)))))))).....))))))..((((((((.(((-(.....))))))).....))))).... ( -32.60, z-score = -1.51, R) >droSim1.chr2R 6115258 98 - 19596830 ----AAGUACGAGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC-UGGAUGAGCCGCCUUUGCAGACUCUGC ----(((((((((........)))((((((((.((....)).)))))))).....))))))..((((((((.(((-(.....))))))).....))))).... ( -32.60, z-score = -1.37, R) >droWil1.scaffold_181009 3185210 91 + 3585778 --AUGGCUACGAGGAAAUGCAGUUGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUUAUGGAUGAAUGCC-AGAACCCACUCUCUCUCU--------- --........(((((.........((((((((.((....)).)))))))).((((((((((.......)))))))-)))......)).)))...--------- ( -25.10, z-score = -1.44, R) >droVir3.scaffold_12875 15287241 92 + 20611582 ---GCUAUACGAGGAAAUGCAGAGGCUUGCGUGUAAGAAUAGGCGUUACCCUUUGGUAUUUAUGAUC-GUUUGCCAGGCACUGCCUUCUCCUCUAC------- ---.......(((((((.((((..(((((.(((...((.((.....((((....))))....)).))-...)))))))).)))).)).)))))...------- ( -25.30, z-score = -0.69, R) >droMoj3.scaffold_6496 24770022 95 - 26866924 ACGGCUAUACGAGGAAAUGCAGACGCUUGCCUGUAAAAAUAGGCGUUGCCCUUCGGUAUUUAUGAUC-GUUUGCCAGGCACUGCCCCCAUCUCCGU------- ..(((...((((..((((((.((.((.(((((((....)))))))..))...)).))))))....))-))..))).(((...)))...........------- ( -27.80, z-score = -0.94, R) >consensus ____AAGUACGAGGAAAUGCACUCGGUUGCGUGUAAAAAUAGGCGUAACCCUUUGGUAUUUAUGGUCUGGCCGGC_UGGAUGAGCCGCCUCUCCAGACUCUGC ..............((((((....((((((((.((....)).)))))))).....)))))).......................................... (-13.88 = -14.27 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:56 2011