| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,590,109 – 7,590,165 |
| Length | 56 |
| Max. P | 0.641410 |
| Location | 7,590,109 – 7,590,165 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 88.10 |
| Shannon entropy | 0.16398 |
| G+C content | 0.41667 |
| Mean single sequence MFE | -11.30 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7590109 56 - 21146708 AACAGAACUGAAUGAAAUGGGUAAGCGGUAAAGAAACCUACUUCAGUCGGGGUAAA .......((((.((((.(((((...(......)..))))).)))).))))...... ( -13.20, z-score = -2.10, R) >droSim1.chr2R 6113710 56 - 19596830 AACAGAACAGAUUGAAAUGGGUGAACGGUACAGAAGCCCACUUUAGUUGGGGUAAA ......((.(((((((.(((((...(......)..))))).)))))))...))... ( -12.40, z-score = -1.19, R) >droSec1.super_1 5142336 56 - 14215200 AACAGAACAGAUUUAAAUGGGUGAACGGUACAGAAGCCCACUUUAGUUGGGGUAAA ......((.((((.((.(((((...(......)..))))).)).))))...))... ( -8.30, z-score = 0.50, R) >consensus AACAGAACAGAUUGAAAUGGGUGAACGGUACAGAAGCCCACUUUAGUUGGGGUAAA ......((.(((((((.(((((...(......)..))))).)))))))...))... (-10.80 = -10.70 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:55 2011