| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,563,550 – 7,563,600 |
| Length | 50 |
| Max. P | 0.810472 |
| Location | 7,563,550 – 7,563,600 |
|---|---|
| Length | 50 |
| Sequences | 11 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 80.84 |
| Shannon entropy | 0.42288 |
| G+C content | 0.54909 |
| Mean single sequence MFE | -11.95 |
| Consensus MFE | -8.94 |
| Energy contribution | -8.38 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7563550 50 + 21146708 AAUGAAGAUCCUGAUGCGAGCGGACACCCAUGUGUCCUUCUCCGUGCCCG .............(((.(((.((((((....))))))..))))))..... ( -12.60, z-score = -1.70, R) >droSim1.chr2R 6086579 50 + 19596830 GAUGAAGAUCCUGAUGCGAGCGGACACCCACGUGUCCUACUCCGUGCCCG .............(((.(((.((((((....))))))..))))))..... ( -12.40, z-score = -1.34, R) >droSec1.super_1 5115275 50 + 14215200 GAUGAAGAUCCUGAUGCGAGCGGACACCCACGUGUCCUACUCCGUGCCCG .............(((.(((.((((((....))))))..))))))..... ( -12.40, z-score = -1.34, R) >droEre2.scaffold_4845 4354654 50 - 22589142 GAUGAAGAUCCUUAUGCGAGCGGACACCCAUGUGUCCUUCUCCGUGCCCG ............((((.(((.((((((....))))))..))))))).... ( -13.20, z-score = -2.04, R) >dp4.chr3 4743076 50 + 19779522 CAUGAAGAUCUUGAUGCGUGCGGACACCCAUGUGUCCUUCGCCGUGCCCG ............(..(((.((((((((....))))))...)))))..).. ( -12.50, z-score = -0.64, R) >droPer1.super_2 4935772 50 + 9036312 CAUGAAGAUCUUGAUGCGUGCGGACACCCAUGUGUCCUUCGCCGUGCCCG ............(..(((.((((((((....))))))...)))))..).. ( -12.50, z-score = -0.64, R) >droAna3.scaffold_13266 8781714 50 + 19884421 AAUGAGAAUCUUAUUGCGGGCGGAUACUCAUGUAUCCUUUGCCAUACCUG ((((((...))))))...(((((((((....))))))...)))....... ( -12.80, z-score = -2.02, R) >droYak2.chr2R 11744317 50 - 21139217 GAUGAAGAUCCUUAUGCGAGCGGACACCCAUGUGUCCUUUUCCGUGCCCG ............((((.(((.((((((....)))))).))).)))).... ( -11.10, z-score = -1.44, R) >droWil1.scaffold_180745 2133179 50 - 2843958 AAUGAAGAUCCUUAUGCGAGCGGACACUCAUGUGUCCUUUUCGGUGCCAG ................((((.((((((....))))))..))))....... ( -12.50, z-score = -0.97, R) >anoGam1.chr2L 16508423 50 + 48795086 GGUGAAGAUUUUGAUGCGCGCCGACACCCAUGUGUCGUUCUCGGUGCCCA ..............((.((((((((((....)))))(....)))))).)) ( -13.40, z-score = -0.20, R) >triCas2.ChLG1X 2270862 50 + 8109244 AAUGAAAGUUUUAAUACGUGCAGAUACACACGUGACAUUUACGAUUCCAG ...(((.((.....((((((........))))))......))..)))... ( -6.10, z-score = -0.44, R) >consensus GAUGAAGAUCCUGAUGCGAGCGGACACCCAUGUGUCCUUCUCCGUGCCCG .................(((.((((((....))))))..)))........ ( -8.94 = -8.38 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:54 2011