| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,549,829 – 7,549,934 |
| Length | 105 |
| Max. P | 0.690065 |
| Location | 7,549,829 – 7,549,934 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.25 |
| Shannon entropy | 0.26809 |
| G+C content | 0.29095 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -10.09 |
| Energy contribution | -11.15 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.690065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7549829 105 - 21146708 GGCCACCCAAUUAAAAAGUUGCUGUCUUUAUAGACACACAAAAAUAAAAAGAAAAUUGAUCUUAGAUUUUAAAGAAUAACAACCUAUAAAUUUCAUUGGCCAUCU (((((...((((.....((((.(((((....)))))....(((((...((((.......))))..))))).........)))).....))))....))))).... ( -16.50, z-score = -2.07, R) >droYak2.chr2R 11734170 100 + 21139217 GGCCACCCAAUAAAAAAGUUUUGGUUUUUGCAAACACAAAAAACC----AGAAAAUAGAUUUCCGAUUUUAAGGAAUAAUAG-CGAUACAUUUUAUUGGCCUCUC (((((....((((((...(((((((((((.........)))))))----)))).......((((........))))......-.......))))))))))).... ( -22.80, z-score = -3.09, R) >droSec1.super_1 5101674 104 - 14215200 GGCCACCCAAUUAAAAUGUUGCUGUCUUUAUAAACACACAAAAAUAAAAAGAAAAUUUAUCCUAGAUUUUAAAGAAUAACAA-CGAUAAAUUUCAUUGGCCAUCU (((((..((((......)))).............................((((.((((((....((((....)))).....-.))))))))))..))))).... ( -15.10, z-score = -2.03, R) >droSim1.chr2R 6072386 104 - 19596830 GGCCACCAAAUUAAAAUGUUGCUGUCUUUAUAAACACACAAAAAUAAAAAGAAAAUUUAUCCUAGAUUUUAAAGAAUAACAA-CGAUAAAUUUCAUUGGCCAUCU (((((...........(((.(.(((........)))))))..........((((.((((((....((((....)))).....-.))))))))))..))))).... ( -15.10, z-score = -2.07, R) >consensus GGCCACCCAAUUAAAAAGUUGCUGUCUUUAUAAACACACAAAAAUAAAAAGAAAAUUGAUCCUAGAUUUUAAAGAAUAACAA_CGAUAAAUUUCAUUGGCCAUCU (((((..................((((....))))...............((((.((((((....((((....)))).......))))))))))..))))).... (-10.09 = -11.15 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:52 2011