| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,523,799 – 7,523,915 |
| Length | 116 |
| Max. P | 0.560476 |
| Location | 7,523,799 – 7,523,915 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.36 |
| Shannon entropy | 0.29927 |
| G+C content | 0.53949 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -12.34 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7523799 116 - 21146708 UGUCUGCGCUCUCAACCUUAAACUUUCCGCUUUUCCGUGGAAAGCUCAUUACAGUGGCACCUCGUUUGCCAGUUGUCUCCUAGCCCCACGAUCCCCCUGCCAACUUUUCUCCCCUC .(((((.(((..((((......((((((((......))))))))..........(((((.......)))))))))......)))..)).)))........................ ( -20.40, z-score = -1.36, R) >droEre2.scaffold_4845 4319128 97 + 22589142 UGUCUAUGCUCUCAACCUUAAACUUUUCGCUUUUCCGUGGAAAGCUCAUUACAGUGCCACCUCGUUCGC---UCGCCCCC---------------ACCCCCCAUUUUCAUCCGUC- .......((.............((((((((......)))))))).........(.((..........))---.)))....---------------....................- ( -8.60, z-score = 0.21, R) >droYak2.chr2R 11708356 106 + 21139217 UGUCUGCGCUCUCAACCUUAAACUUUCCGCUUUUCCGUGGAAAGCUCAUUACAGUGGCACCUCGUUCGCCAGUUGCCCCCUUGCCCC---------CCACC-ACUUUUCUCCCCUU .....(((....((((......((((((((......))))))))..........((((.........))))))))......)))...---------.....-.............. ( -17.80, z-score = -1.27, R) >droSec1.super_1 5074254 100 - 14215200 UGUCUGCGCUCUCAACCUUAAACUUUCCGCUUUUCCGUGGAAAGCUCAUUACAGUGGCACCUCGUUCGCCAGUUGUCCCC----------------CCGCCAACUUUUCUCCCCUC .((..(((....((((......((((((((......))))))))..........((((.........)))))))).....----------------.)))..))............ ( -21.20, z-score = -2.82, R) >droSim1.chr2R 6046564 116 - 19596830 UGUCUGCGCUCUCAACCUUAAACUUUCCGCUUUUCCGUGGAAAGCUCAUUACACUGGCACCUCGUUCGCCAGUUGUCCCCUAGCCCCACGAUCCCCCCGCCAACUUUUCUCCCCUC .((..(((..............((((((((......))))))))......((((((((.........))))).))).....................)))..))............ ( -22.60, z-score = -2.94, R) >consensus UGUCUGCGCUCUCAACCUUAAACUUUCCGCUUUUCCGUGGAAAGCUCAUUACAGUGGCACCUCGUUCGCCAGUUGUCCCCU_GCCCC_________CCGCCAACUUUUCUCCCCUC ............((((......((((((((......))))))))..........((((.........))))))))......................................... (-12.34 = -13.18 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:46 2011