| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,521,515 – 7,521,578 |
| Length | 63 |
| Max. P | 0.513984 |
| Location | 7,521,515 – 7,521,578 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Shannon entropy | 0.49719 |
| G+C content | 0.45947 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -7.44 |
| Energy contribution | -8.08 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7521515 63 + 21146708 GAUUAAUGCCUGAAAGAGAUAUCGUUGGCACACAGCCAGCAUACAAAGUUGACUGGCAUGUCC (((..(((((.(...((....))((((((.....))))))............).)))))))). ( -16.90, z-score = -1.82, R) >droEre2.scaffold_4845 4316807 63 - 22589142 GAUUUAUGCCCGAAAGCGAUAUCGUUGGCACACAAACGGCAUACAAAGUUGACUGGCAUGUCC ....((((((.(..(((.((..((((........))))..)).....)))..).))))))... ( -13.30, z-score = -0.23, R) >droYak2.chr2R 11706084 63 - 21139217 GAUUUAUGCCCGAAAGCGAUUUCGUUGGCACACAACCGGCAUAUAAAGUUGGCUGGCAAGUCC (((((.(((((((((....)))))..))))..((.(((((.......))))).))..))))). ( -16.50, z-score = -0.86, R) >droSec1.super_1 5072019 63 + 14215200 GAUUAAUGCCUGAAAGCGGUAUCGCUGGCACACAACCAGCAUACAAAGUUGACUGGCAUGUCC (((..(((((....(((.((((.(((((.......)))))))))...)))....)))))))). ( -21.10, z-score = -2.75, R) >droSim1.chr2R 6044332 63 + 19596830 GAUUAAUGCCUGAAAGCGAUAUCGCUGGCACACAACCAGCAUACAAAGUUGACUGGCAUGUCC (((..(((((....(((..(((.(((((.......))))))))....)))....)))))))). ( -16.80, z-score = -1.81, R) >droMoj3.scaffold_6496 23265916 50 - 26866924 GACAAAUAUCAAAUCGUAACGUCAAUCACACACAAAGCUCAUGAAAAGCU------------- (((.................)))............((((.......))))------------- ( -2.43, z-score = -0.06, R) >consensus GAUUAAUGCCUGAAAGCGAUAUCGUUGGCACACAACCAGCAUACAAAGUUGACUGGCAUGUCC .....(((((....(((..(((.(((((.......))))))))....)))....))))).... ( -7.44 = -8.08 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:45 2011