| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,503,756 – 7,503,846 |
| Length | 90 |
| Max. P | 0.937693 |
| Location | 7,503,756 – 7,503,846 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 93.21 |
| Shannon entropy | 0.11730 |
| G+C content | 0.29526 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.04 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.937693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7503756 90 - 21146708 CAAUAUCGGGUCAAUCAAAAUGUGGUUAAAGGUUUUGUCUAAACAAGCGCAGAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA ........(((((.(((((.....((((..((((((((((.....)).))))))))..))))..))))).)))))............... ( -14.50, z-score = -0.57, R) >droEre2.scaffold_4845 4296874 90 + 22589142 CAAUAUAAGGCCAAUCAAAAUGUGGUUAAAGGUUUUGCGCAAACAAGCGCAGAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA ............(((((....(((((((...(((((((((......)))))))))(((.........))))))))))....))))).... ( -22.20, z-score = -3.01, R) >droYak2.chr2R 11687643 89 + 21139217 CAAUAUCAGGCCAAUC-GAAUGUGGUUAAAGGUUUUGAGCAAACAAGCGCAGAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA ............((((-(...(((((((...((((((.((......)).))))))(((.........))))))))))....))))).... ( -15.40, z-score = -0.48, R) >droSec1.super_1 5054020 89 - 14215200 -AAUAUCGGUUCAAUCAAAAUGUGGUUAAAGGUUUUGAGUAAACAAGCUCAAAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA -...........(((((....(((((((...(((((((((......)))))))))(((.........))))))))))....))))).... ( -18.90, z-score = -2.83, R) >droSim1.chr2R 6026042 89 - 19596830 -AAUAUCGGGUCAAUCAAAAUGUGGUUAAAGGUUUUGAGUAAACAAGCGCAAAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA -.......(((((.(((((.....((((..(((((((.((......)).)))))))..))))..))))).)))))............... ( -14.90, z-score = -1.05, R) >consensus CAAUAUCGGGUCAAUCAAAAUGUGGUUAAAGGUUUUGAGUAAACAAGCGCAGAAUUCCUAAUAAUUUGGAUGACUAUUAAAUGAUUAAUA ............(((((....(((((((...(((((((((......)))))))))(((.........))))))))))....))))).... (-16.92 = -17.04 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:43 2011