| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,502,784 – 7,502,900 |
| Length | 116 |
| Max. P | 0.940334 |
| Location | 7,502,784 – 7,502,900 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.28 |
| Shannon entropy | 0.38266 |
| G+C content | 0.42800 |
| Mean single sequence MFE | -32.15 |
| Consensus MFE | -20.99 |
| Energy contribution | -22.30 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7502784 116 + 21146708 GGGCAGCAAAAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCUUCCUCUUUUUUAUCCGCUUCGGUUUU-CUGCCUAUUUUAUUU ((((((.((((.(..(((((..((((.((...((((.((((((..(((..((....))....)))..)).)))))))))).))))..)))))...).))))-))))))......... ( -32.40, z-score = -1.99, R) >droEre2.scaffold_4845 4295885 117 - 22589142 GGGCAGCAAGAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCUUCCUCUUCUUUAUCCGCUUCGGUUUUUCUGCCUAUUUUAUUU ((((((.((((((..(((((...(((.(((..((((.((((((..(((..((....))....)))..)).))))))))..)))))).)))))....))))))))))))......... ( -37.10, z-score = -2.92, R) >droYak2.chr2R 11686666 117 - 21139217 GGGCAGCAAAAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCUUCCUCUUUUUUAUCCGCUUCGGUUUUUCUGCCUAUUUUAUUU ((((((.((((((..(((((..((((.((...((((.((((((..(((..((....))....)))..)).)))))))))).))))..)))))....))))))))))))......... ( -34.90, z-score = -2.73, R) >droSec1.super_1 5053041 117 + 14215200 GGGCAGCAAAAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCUUCUUCUUCUUUAUCCGCUUCGGUUUUUCUGCCUAUUUUAUUU ((((((.((((((..(((((...(((.(((..((((.((((((..(((..((....))....)))..)).))))))))..)))))).)))))....))))))))))))......... ( -35.00, z-score = -2.89, R) >droSim1.chr2R 6025059 117 + 19596830 GGGCAGCAAAAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCCUCCUCUUCUUUAUCCGCUUCGGUUUUUCUGCCUAUUUUAUUU ((((((.((((((..(((((...(((.(((..(((..((((((..(((..((....))....)))..)).)))).)))..)))))).)))))....))))))))))))......... ( -34.80, z-score = -2.55, R) >droGri2.scaffold_15245 7421326 94 + 18325388 -----------CCCUGCGGAACGAAACGAAAUGAAAUGGCAGGCAGAACUUUUUU-CUUUUUGUUUUUUGCUUGCUGCCGCUUGCUGGUUGAUGCUGUUCUUCUUU----------- -----------....(.((((((..............(((((((((((.......-.........)))))))))))((((.....))))......)))))).)...----------- ( -18.69, z-score = 0.86, R) >consensus GGGCAGCAAAAGCAUGUGGAACGAAAUGAAAUGGAAUGAAGGACUGAAAUCGGCGACGCUACUUCUUUCGCUUCUUCCUCUUCUUUAUCCGCUUCGGUUUUUCUGCCUAUUUUAUUU ((((((.((((((..(((((............(((((((((((.......((....)).....))))))).))))............)))))....))))))))))))......... (-20.99 = -22.30 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:42 2011