| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,490,511 – 7,490,564 |
| Length | 53 |
| Max. P | 0.987659 |
| Location | 7,490,511 – 7,490,564 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 63.46 |
| Shannon entropy | 0.61889 |
| G+C content | 0.43363 |
| Mean single sequence MFE | -10.64 |
| Consensus MFE | -7.78 |
| Energy contribution | -6.94 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7490511 53 + 21146708 -UAAACUGUGGACCACUA-GCACUUUAUGGCUUAGACACGCUUAAGCCGC-CAUUA---- -((((.(((((....)))-.)).)))).(((((((......)))))))..-.....---- ( -9.00, z-score = -0.18, R) >droEre2.scaffold_4845 4283733 53 - 22589142 -UAAACUAUGAUCCACCA-GCACUUUAAGGCUUAGACACGCUUAAGCCAC-AAUUA---- -.................-.........(((((((......)))))))..-.....---- ( -8.60, z-score = -2.15, R) >droYak2.chr2R 11674454 53 - 21139217 -UAAUAUAUGGACCACCA-GCACUUUAAGGGUUAGCCACGCUUAACCCAC-CAAUA---- -.......(((....)))-.........((((((((...)).))))))..-.....---- ( -10.40, z-score = -1.47, R) >droSim1.chr2R 6015443 54 + 19596830 -UAAACUGCGCACCACUAAGCACUUUAUGGCUUAGACACGCUUAAGCCGU-CAUUA---- -((((.(((..........))).))))((((((((......)))))))).-.....---- ( -11.20, z-score = -1.31, R) >droVir3.scaffold_12875 15076026 59 + 20611582 UAAAUGUGUAGGGUACUCACUGGUGUUCAGUUUGGCUA-ACUCAGUCUUCACAUCGGUGA ................((((((((((..((.((((...-..)))).))..)))))))))) ( -14.00, z-score = -0.88, R) >consensus _UAAACUGUGGACCACUA_GCACUUUAAGGCUUAGACACGCUUAAGCCAC_CAUUA____ ............................(((((((......)))))))............ ( -7.78 = -6.94 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:41 2011