| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,478,914 – 7,479,012 |
| Length | 98 |
| Max. P | 0.760697 |
| Location | 7,478,914 – 7,479,012 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 60.44 |
| Shannon entropy | 0.81207 |
| G+C content | 0.39282 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -5.86 |
| Energy contribution | -4.06 |
| Covariance contribution | -1.80 |
| Combinations/Pair | 2.08 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7478914 98 - 21146708 -------AAAGUAAUUUCCCUAAAUUGUGCGGAGUAU-AACAGAAAAUG-UCUUGU---CUAUCGCGC-AAGAACGUUUGAAGAAAAUACUCCUAGAGC---AUUUAGUAACUU---- -------............((((((.((..(((((((-......(((((-((((((---.......))-))).)))))).......)))))))....))---))))))......---- ( -21.42, z-score = -2.16, R) >droSim1.chr2R 6003425 100 - 19596830 -------AAAGUAAUUUCCUUAAAUUGUGCGGAGUAU-AAAAGAAAAUG-UCUUGU---CUAUCGCGC--AAAACAUUUAAAGAAAAUACUCCUAGAGCAUUAUUUAGUAACUU---- -------..((((.((((.(((((((((((((((...-..((((.....-))))..---)).))))))--)....)))))).)))).)))).(((((......)))))......---- ( -19.70, z-score = -2.32, R) >droSec1.super_1 5029733 99 - 14215200 -------AAAGUAAUUUCCUUAAAUUGUGCGGAGUAU-AACAGAAAAUG-UCUUGU---CUAUCGCGC--AGAACGUUUGAAGAAAAUACUCCUAGAGCA-UAUUUAGUAACUU---- -------..((((.((((.(((((((((((((((((.-.(((.....))-)..)).---)).))))))--)....)))))).)))).)))).(((((...-..)))))......---- ( -20.70, z-score = -1.64, R) >droYak2.chr2R 11662817 100 + 21139217 -------AAUAUAAUUCCCCCAAAUUGUGUGGAGUAA-AACAGCAAACA-UCUUGU---CUAUCGCGC--AGAUCGUUUGAAGAAAAUACUCCUAGAGCAUUAUUUAGUAACUU---- -------.((((((((......))))))))((((((.-.....((((((-((((((---.....))).--)))).))))).......)))))).....................---- ( -18.52, z-score = -1.71, R) >droEre2.scaffold_4845 4271916 99 + 22589142 -------AUUGUAAUUCCCCCAAAUUGUGUGGAGUAA-AACAGCAAACG-UCUUGU---CUAUCGCGC--AGAUCGUUUGAAGAGAAAACUCCUAGAGCAUUUAGUA-UAACUU---- -------..................(((..(((((..-.....((((((-((((((---.....))).--))).))))))........)))))....))).......-......---- ( -17.26, z-score = -0.43, R) >droAna3.scaffold_13266 1193257 91 - 19884421 ----------------CCACUACCUACUAUGGAGUUUAAACAGCAAGUG-CCUGGU----GAUCCUGUGCCGGGCACUUGAAGAAGACUCUCCUAGAACAGACUCC--CAGCUG---- ----------------..........(((.((((.........((((((-((((((----........)))))))))))).........)))))))..(((.....--...)))---- ( -30.67, z-score = -2.83, R) >dp4.chr3 4666538 99 - 19779522 --------------UUCUCUCAAUUUCUGUGGAGGCA-AACAGCAAGUGCUCUCGU--CCUAUCGAGC--GAGGCAUUUGAAGAAAAUCCUCCUAGAGCAAACUUUCGUCUAAUACUC --------------..........(((((.(((((..-.....(((((((.((((.--.(....)..)--))))))))))........)))))))))).................... ( -28.06, z-score = -2.34, R) >droPer1.super_2 4854898 99 - 9036312 --------------UUCUCUCAAUUUCUGUGGAGGCA-AACAGCAAGUGCUCUCGU--CCUAUCGAGC--GGGGCAUUUGAAGAAUAUCCUCCUAGAGCAAACUUUCGUCUAAUACUC --------------..........(((((.(((((..-.....(((((((((.((.--.(....)..)--))))))))))........)))))))))).................... ( -27.16, z-score = -1.87, R) >droWil1.scaffold_180745 959830 87 + 2843958 ------------AAUUCU------UUGUUGGAGCUAA-AACAGCAAAUG-UUCGGU---AUUUCCUGC--UGAGCGUUUGAAGAAAACACUCCUAGAGCAUAUUUU--UGGUUU---- ------------....((------(((..((((....-.....((((((-((((((---(.....)))--)))))))))).........)))))))))........--......---- ( -21.87, z-score = -1.62, R) >droVir3.scaffold_12875 7642120 99 + 20611582 --------AGAGUGAUAUUCUUCUUUGUUUGGAGUUC-AACAGCGAGUG-UCUCGUCCAAU-CC--GCGCGAUUCACUUGAAGAAAACGCUCCUAAAGCAACAAUU--UCGCUU---- --------.((((((.(((.(((((((...(((((..-.....((((((-..((((.(...-..--).))))..))))))........)))))))))).)).))).--))))))---- ( -26.66, z-score = -1.69, R) >droMoj3.scaffold_6496 6632751 93 + 26866924 --------AGAGAGCUUUUGUAUUCAUAUGGGAGUGC-AACAGCAAGUG-UUUCGUCCUUUGUU--GCGCGAUUCACUUGAAGAAAACGCUCCUAGAGAAAAACU------------- --------.(((.((....)).)))...((((((((.-.....((((((-..((((.(......--).))))..)))))).......))))))))..........------------- ( -27.52, z-score = -2.00, R) >droGri2.scaffold_15245 7397399 110 - 18325388 AAAAUUGUGUAUUAUUUGUGUGUGUGUCGUGGAGUUC-AACAGCAAAUG-UCUCGUCUAAAAUCAAGCGCGAUUCAUUUGAAGAAAUCUCUCCUAGAGCAACAAAA--UCGCUU---- ......(((.....(((((.(((.......((((...-.....((((((-..((((((.......)).))))..)))))).........))))....)))))))).--.)))..---- ( -20.23, z-score = -0.05, R) >consensus ________A__UAAUUCCCCUAAAUUGUGUGGAGUAA_AACAGCAAAUG_UCUCGU___CUAUCGCGC__AGAUCAUUUGAAGAAAAUACUCCUAGAGCAAAAUUU__UAACUU____ ..............................(((((.........(((((...((................))..))))).........)))))......................... ( -5.86 = -4.06 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:38 2011