Locus 373

Sequence ID dm3.chr2L
Location 2,592,610 – 2,592,713
Length 103
Max. P 0.706776
window511

overview

Window 1

Location 2,592,610 – 2,592,713
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.76
Shannon entropy 0.35176
G+C content 0.40104
Mean single sequence MFE -27.64
Consensus MFE -21.66
Energy contribution -21.94
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.22
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.706776
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2592610 103 - 23011544
-------------AGUCUAAUUAC----UUAAUCACUUCUGAACGCUGAUGAUUUCAUAGGUGAGAUCGUGACGAUCGCGAUACCGAUUGCAGAAACUAUUCAGAGUGAAGAGGGCAUCC
-------------..........(----((..(((((.(((((((.(.(((((((((....))))))))).)))...(((((....)))))........))))))))))..)))...... ( -28.10, z-score =  -1.50, R)
>droSim1.chr2L 2551009 103 - 22036055
-------------AGUCUAAUUAC----UUAAUCACUUCAGAACGCUGAUGAUUUCAUAGGUGAGAUCGUUACGAUCGCGAUACCGAUUGCAGUAACUAUUCAGAGUGAAGAGGGCAUCC
-------------..........(----((..((((((..((.((.(((((((((((....))))))))))))).))(((((....)))))............))))))..)))...... ( -26.40, z-score =  -1.28, R)
>droSec1.super_5 760927 103 - 5866729
-------------AGUCUAAUUAC----UAAAUCACUUCUGAACGCUGAUGAUUUCAUAGGUGAGAUCGUUACGAUCGCGAUACCGAUUGCAGUAGCUAUUCAGAGUGAAGAGGGCAUCC
-------------..........(----(...(((((.(((((((.(((((((((((....)))))))))))))...(((((....)))))........))))))))))..))....... ( -28.50, z-score =  -1.48, R)
>droYak2.chr2L 2580675 120 - 22324452
AGUCGAGUUAACUAAUCUAGUAUCAGUUUUGAUCAUUUCUCAACGUUGAUGAUUUCAUAGUUGGAAUCGUUACGAUCGUGAUAUAAAUUGCAGUAACUAUUCAGUGUGAAAAGAGCAUCC
...............(((..((((((..((((.......))))..)))))).(((((((....((((.(((((....(..((....))..).))))).))))..))))))))))...... ( -21.80, z-score =   0.47, R)
>droEre2.scaffold_4929 2634262 120 - 26641161
AAUCGAAUAAGCUGAUCUAAAAUCGGUUUGGAUCAUUACUCAACGGUGAUGAUUUCAUAGGUGAAAUCGUGACGAUCGCGAUAUAGAUUGCAGUAACUAUUCAGGGUGAAAAGAGCAUCC
....(((((...(((((((((.....)))))))))(((((.....((.(((((((((....))))))))).))....(((((....)))))))))).))))).(((((.......))))) ( -33.40, z-score =  -2.30, R)
>consensus
_____________AGUCUAAUUAC____UUAAUCACUUCUGAACGCUGAUGAUUUCAUAGGUGAGAUCGUUACGAUCGCGAUACCGAUUGCAGUAACUAUUCAGAGUGAAGAGGGCAUCC
................................(((((.(((((((.(((((((((((....)))))))))))))...(((((....)))))........))))))))))........... (-21.66 = -21.94 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:44 2011