| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,454,404 – 7,454,495 |
| Length | 91 |
| Max. P | 0.781626 |
| Location | 7,454,404 – 7,454,495 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.18 |
| Shannon entropy | 0.53460 |
| G+C content | 0.50500 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -12.07 |
| Energy contribution | -13.12 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7454404 91 + 21146708 ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGUCA-AUGGCAGUCAGAACGGCAGCAAACAU---CGACG----AUCGG-----CGAUUGCACAAUGAUCGG .......((((((.(((.((((.(....).)))).))-))))).(((.....))).))......---...((----(((((-----(....))....)))))). ( -24.40, z-score = -1.03, R) >droSim1.chr2R 5978117 95 + 19596830 ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGUCA-AUGGCAGUCAGAACGGCAGCAACAGCAA-CGACG----AUCGGG---CCGAUUGCACAAUGAUCGG .(((...((((((.(((.((((.(....).)))).))-))))).(((.....))).))........-.(...----..))))---((((((.......)))))) ( -27.00, z-score = -1.20, R) >droSec1.super_1 5005402 92 + 14215200 ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGUCA-AUGGCAGUCAGAACGGCAGCAACAG----CGACG----AUCGAG---GCGAUUGCACAAUGAUCGG .......((((((.(((.((((.(....).)))).))-))))).(((.....))).)).....----...((----((((..---((....))....)))))). ( -25.90, z-score = -1.19, R) >droYak2.chr2R 11637768 103 - 21139217 ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGUCA-AUGGCAGCCAGAACGGCAGCACAACAUCACAACAUCACAGCAACACAGCGAUUGCACAAUGAUCGG ..((...((((((.(((.((((.(....).)))).))-))))).(((.....))).))...................((((........)))).........)) ( -24.60, z-score = -1.77, R) >droEre2.scaffold_4845 4246996 99 - 22589142 ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGCCA-AUGGCAGUCAGAACGGCAGCAGCCGCAUCCCAAC----AUCACGACAGCGAUUGCACAAUGAUCGG ..((...((((((.(((.((((.(....).)))).))-))))).(((.....(((....)))(........)----.....))).))((((.......)))))) ( -23.80, z-score = -0.41, R) >droGri2.scaffold_15245 7365186 74 + 18325388 ACCCAAAGCGCCAAUUGUCACAACAAUUGAGCCGCCUUGCAAGACUUGGCACAAAAGAAUAAGC---CAAAG----AUCUA----------------------- ...(((.(((((((((((....))))))).).))).)))..(((((((((............))---).)))----.))).----------------------- ( -17.60, z-score = -2.61, R) >consensus ACCCAAAGCGCCAAUUGUCCAUAGAAGUCAAUGGUCA_AUGGCAGUCAGAACGGCAGCAAAAGC___CGACG____AUCGAG___GCGAUUGCACAAUGAUCGG .......((((((..((.((((.(....).)))).))..)))).(((.....))).))............................(((((.......))))). (-12.07 = -13.12 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:37 2011