| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,442,281 – 7,442,361 |
| Length | 80 |
| Max. P | 0.987133 |
| Location | 7,442,281 – 7,442,361 |
|---|---|
| Length | 80 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 77.35 |
| Shannon entropy | 0.45904 |
| G+C content | 0.47830 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -13.62 |
| Energy contribution | -14.31 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.987133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7442281 80 - 21146708 CCGGACGGACAAGUGAUUGAGACAGACG-CCCCAACGGGCAUGAAGUUUUAAUCAAAGCGUUCCGGAAAAAGGCAUUGCCG (((((((......((((((((((....(-(((....)))).....))))))))))...)).))))).....(((...))). ( -28.00, z-score = -3.16, R) >droPer1.super_2 4815105 67 - 9036312 ----CUGGACAACUGAUUG----------UCCGUACGGAUAUGAAGAUCUAAUCAAAAGAUUCCAUUGAAACAUGAAGCCG ----..((((((....)))----------)))...(((.((((..(((..((((....))))..)))....))))...))) ( -12.80, z-score = -1.24, R) >droAna3.scaffold_13266 1156207 77 - 19884421 ----UAGGACAAGUGAUUGAGACAAACGCCCCCAAAGGGAGUAAAGUUUUAAUCAAUGCAAUCCGGACAAAAAAAUUGUUA ----..(((....((((((((((..((.(((.....))).))...))))))))))......))).(((((.....))))). ( -19.80, z-score = -3.24, R) >droEre2.scaffold_4845 4232968 80 + 22589142 CCGGACGGACAAGUGAUUGAGACAGACG-CCCCAACGGGAAUGAAGUUUUAACCAAGGCGUUCCGGAAAAUGCCAUUGCCG .....(((.(((.((.(((((((.....-(((....)))......))))))).)).((((((......)))))).)))))) ( -20.60, z-score = -0.59, R) >droYak2.chr2R 11621234 79 + 21139217 CCGGACGGACAAGUGAUUGAGACAGACG-CCCCAACGGGUAUGAAGUUUUAAUCAAAGCGUUCCGGA-AAAAACAUUGCUG (((((((......((((((((((....(-(((....)))).....))))))))))...)).))))).-............. ( -23.50, z-score = -2.51, R) >droSec1.super_1 4993462 80 - 14215200 CCGGACGGACAAGUGAUUGAGACAGACG-CCCCAACGGGUAUGAAGUUUUAAUCAAAGCGAUCCGGAAAAAGGCAUUGCCG (((((((......((((((((((....(-(((....)))).....))))))))))...)).))))).....(((...))). ( -26.40, z-score = -3.08, R) >droSim1.chr2R 5965878 80 - 19596830 CCGGACGGACAAGAGAUUGAGACAGACG-CGCCAACGGGUAUGAAGUUUUAAUCAAAGCGUUCCGGAAAAAGGCAUUGCCG (((((((.......(((((((((...((-..((....))..))..)))))))))....)).))))).....(((...))). ( -22.40, z-score = -1.70, R) >consensus CCGGACGGACAAGUGAUUGAGACAGACG_CCCCAACGGGUAUGAAGUUUUAAUCAAAGCGUUCCGGAAAAAGACAUUGCCG .....((((....((((((((((......(((....)))......))))))))))......))))................ (-13.62 = -14.31 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:36 2011