| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,422,470 – 7,422,533 |
| Length | 63 |
| Max. P | 0.703929 |
| Location | 7,422,470 – 7,422,533 |
|---|---|
| Length | 63 |
| Sequences | 9 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 74.69 |
| Shannon entropy | 0.53988 |
| G+C content | 0.42405 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -6.65 |
| Energy contribution | -6.58 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7422470 63 + 21146708 AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGUUUCUAAGCCAAUCUGCAAU---- .....((..((((((((((((((......)))))))).............))))))..))...---- ( -16.31, z-score = -2.20, R) >droWil1.scaffold_180745 857942 58 - 2843958 AACACGUCAAUUGAGUAGGAAAUUAACGCAUUUUUUGCUGC--UUUCAUUUUUUGAUCAA------- .....(((((..((((((.(((...........))).))))--)).......)))))...------- ( -8.10, z-score = -0.32, R) >dp4.chr3 4606095 67 + 19779522 AACACGUCAAUUGGCUGCGAAAUUAACGCAUUUCGCGCUUUCAUUUCGACUUCAGCACGGGAUCGAU ....((((.....((((((((((.(((((.....))).))..))))))....))))....)).)).. ( -13.60, z-score = -0.22, R) >droAna3.scaffold_13266 1133402 63 + 19884421 AACACGUCAAUUGGCUACAAAAUUAACGCAUUUCUCGCUUUCGUUUCUAACCAAAGUUGCGAU---- .....(((....)))...........((((......(((((.((.....)).)))))))))..---- ( -8.00, z-score = -0.35, R) >droEre2.scaffold_4845 4214147 63 - 22589142 AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGAUUCGAAGCCAAUCUGCGAU---- ....(((..((((((((((((((......))))))))..((((...))))))))))..)))..---- ( -21.10, z-score = -2.62, R) >droYak2.chr2R 11600491 63 - 21139217 AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGUUUCGAAGCCAAUCUGCGAU---- ....(((..((((((((((((((......))))))))..((((...))))))))))..)))..---- ( -21.10, z-score = -2.69, R) >droSec1.super_1 4973410 58 + 14215200 AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGUUUCUAAGCCAAUCU--------- .........((((((((((((((......)))))))).............))))))..--------- ( -13.71, z-score = -1.84, R) >droSim1.chr2R 5944977 63 + 19596830 AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGUUUCUAAGCCAAUCUGCAAU---- .....((..((((((((((((((......)))))))).............))))))..))...---- ( -16.31, z-score = -2.20, R) >droGri2.scaffold_15245 7324343 59 + 18325388 -----GUCAAGUGGCUG-AAAAUUAACGCAUUUCGCGCUUUCAUCGUUAAUUGAUACUCUGUAAU-- -----(((((.((((((-(((.....(((.....))).)))))..)))).)))))..........-- ( -9.30, z-score = -0.33, R) >consensus AACACGUCAAUUGGCCGCGAAAUUAACGCAUUUCGCGCUUUCGUUUCUAAGCCAAUCUGCGAU____ .....(((....)))((((((((......)))))))).............................. ( -6.65 = -6.58 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:34 2011