| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,415,738 – 7,415,835 |
| Length | 97 |
| Max. P | 0.766365 |
| Location | 7,415,738 – 7,415,835 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.06 |
| Shannon entropy | 0.50266 |
| G+C content | 0.54141 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -12.47 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7415738 97 - 21146708 --UGCGCAGUUCGCUGGGGACACAGUUGUCAACCGGCUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUUGCUGCCUAACAAGCCCCCCUCGCCAAA---- --((((((....(((((((...((((((.....))))))....))))))).))))))...............(((........))).............---- ( -29.60, z-score = -0.95, R) >droEre2.scaffold_4845 4207032 97 + 22589142 --UGCGCAGUUCGCUGGGGACACAGUUGUCAACCGACUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUUGCUGCCUAACAAGCCCCCCUCGCCAGA---- --((((((....(((((((...((((((.....))))))....))))))).))))))...............(((........))).............---- ( -30.10, z-score = -1.58, R) >droYak2.chr2R 11593555 97 + 21139217 --UGCGCAGUUCGCUGGGGACACAGUUGUCAACCGACUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUUGCUGCCUAACAAGCCCCCCUCGCCAAA---- --((((((....(((((((...((((((.....))))))....))))))).))))))...............(((........))).............---- ( -30.10, z-score = -1.95, R) >droSec1.super_1 4966640 97 - 14215200 --UGCGCAGUUCGCUGGGGACACAGUUGUCAACCGGCUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUUGCUGCCUAACAAGCCCCCCUCGCCAAA---- --((((((....(((((((...((((((.....))))))....))))))).))))))...............(((........))).............---- ( -29.60, z-score = -0.95, R) >droSim1.chr2R 5938317 97 - 19596830 --UGCGCAGUUCGCUGGGGACACAGUUGUCAACCGGCUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUUGCUGCCUAACAAGCCCCCCUCGCCAAA---- --((((((....(((((((...((((((.....))))))....))))))).))))))...............(((........))).............---- ( -29.60, z-score = -0.95, R) >dp4.chr3 4599075 96 - 19779522 --GACGCA-AACGCUGGCGACACAGUUGUCAACCGCAUGACAGCUCCAGCGCGCGCAUAAUAAAGUCAUAUCGGGGCCUAACAAGGCCUCAGAAAAGCA---- --(.(((.-..((((((......((((((((......)))))))))))))).))))................(((((((....))))))).........---- ( -34.30, z-score = -3.17, R) >droPer1.super_2 4787302 96 - 9036312 --GACGCA-AACGCUGGCGACACAGUUGUCAACCGCAUGACAGCUCCAGCGCGCGCAUAAUAAAGUCAUAUCGGGGCCUAACAAGGCCUCAGAAAAGCA---- --(.(((.-..((((((......((((((((......)))))))))))))).))))................(((((((....))))))).........---- ( -34.30, z-score = -3.17, R) >droAna3.scaffold_13266 1126335 87 - 19884421 ---------GGCGC-AGAGACACAGUUGUCAACCGCAUGACAGCUCCAGCGCGCGCAUAAUAAAGUCAUAUCGCCGCCUAACAAGCCCCCCUU--CAAA---- ---------((((.-...(((..((((((((......))))))))...((....))........)))....))))..................--....---- ( -20.90, z-score = -1.63, R) >droWil1.scaffold_180745 848560 97 + 2843958 --GACGCAGAACUCGGACGACACAGUUGUCAACCGCAUGACAGCUUCAGCGCGCGCAUAAUAAAGUCAUAUCGAGCCCUAACAAGACCCCACCAAAAAG---- --.....((..(((((..(((..((((((((......))))))))...((....))........)))...)))))..))....................---- ( -19.50, z-score = -1.57, R) >droMoj3.scaffold_6496 6545165 96 + 26866924 GACGCAGACGCAGACAGCGACACAGUUGUCAACCGCAUGACAGCUCCCA-------AUAAUAAAGUCAUAUCGAGCCCUAACAAGCGCGGGCCCCAACGCAAA .........((.((((((......))))))..(((((((((........-------........))))).....((........))))))........))... ( -23.09, z-score = -1.76, R) >droVir3.scaffold_12875 7558915 96 + 20611582 GACGCAGACGCAGACAGCGACACAGUUGUCAACCACAUGACAGCUCCCA-------AUAAUAAAGUCAUAUCGAGCCCUAACAAGCGCGGGCCCCAACGUGGA ...((....)).((((((......))))))..(((((((((........-------........))))).....((((..........))))......)))). ( -25.09, z-score = -1.92, R) >consensus __UGCGCAGUUCGCUGGCGACACAGUUGUCAACCGCAUGACAGCUCCAGCAUGCGCAUAAUAAAGUCAUAUCGCGGCCUAACAAGCCCCCCUCGCCAAA____ ..................(((..((((((((......))))))))...((....))........))).................................... (-12.47 = -12.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:33 2011