| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,399,876 – 7,399,932 |
| Length | 56 |
| Max. P | 0.658575 |
| Location | 7,399,876 – 7,399,932 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 90.18 |
| Shannon entropy | 0.16054 |
| G+C content | 0.58287 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -14.24 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7399876 56 - 21146708 CGGAUGGCUUGCAGUAGGGUCCCACACCUGCUGCGUUUUCGAUCACCCCUUUUCCC ..(((.(..(((((((((........)))))))))....).)))............ ( -17.90, z-score = -1.90, R) >droSim1.chr2R 5922618 56 - 19596830 CCGAUGGCUGGCAGCAGGGUCCCACACCUGCUUCGUUUUCGAUCACCCCUUUUCCC .(((..((.((.((((((........))))))))))..)))............... ( -15.40, z-score = -1.17, R) >droSec1.super_1 4951006 56 - 14215200 CUGAUGGCUGGCAGUAGAGUCCCACACCUGCUGCGUUUUCGAUCACCCCUUUUCCC .((((.(...(((((((.((.....))))))))).....).))))........... ( -12.80, z-score = -0.74, R) >droYak2.chr2R 11576330 55 + 21139217 CUGAUGGUUUGCAGUAGGGUGGCACACCUGCUGCGUUUUCGAUCACCCCUUUCCC- .((((.(..(((((((((........)))))))))....).))))..........- ( -19.10, z-score = -2.12, R) >consensus CUGAUGGCUGGCAGUAGGGUCCCACACCUGCUGCGUUUUCGAUCACCCCUUUUCCC ..(((.(..(((((((((........)))))))))....).)))............ (-14.24 = -15.05 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:31 2011