| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,388,828 – 7,388,919 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 7,388,828 – 7,388,919 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 87.18 |
| Shannon entropy | 0.24668 |
| G+C content | 0.50458 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -20.40 |
| Energy contribution | -21.13 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 7388828 91 + 21146708 ACUCUUCCGAUACCAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACGAGAUCAGCGCCUCUGAUGUGAUCAUUAGGGUGAAAGUAACUCCC .(((........((.((((((......)))))).))(((....)))))).....((((.((((((....))))))))))............ ( -26.30, z-score = -1.24, R) >droSim1.chr2R 5911976 91 + 19596830 ACUCUUCCGAUACCAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACAAGAUCAGCGCCUCUGAUGGGAUCAUUAGGGUGAAAGUAACUCCC ..((.(((....((.((((((......)))))).))(((((((((..(((........)))..)))))))))..))).))........... ( -27.50, z-score = -1.34, R) >droSec1.super_1 4939943 91 + 14215200 ACUCUUCCGAUACCAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACAAGAUCAGCGCCUCUGAUGGGAUCAUUAGGGUGAAAGUAACUCCC ..((.(((....((.((((((......)))))).))(((((((((..(((........)))..)))))))))..))).))........... ( -27.50, z-score = -1.34, R) >droYak2.chr2R 11564845 91 - 21139217 ACUCUUCCGAUACCAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACGAGAUCAGCGCCUCUGAUGUGUUCAUUAGGGUGAAAGUAACUCCC .(((........((.((((((......)))))).))(((....)))))).....((((.((((((....))))))))))............ ( -26.30, z-score = -1.34, R) >droEre2.scaffold_4845 4179557 91 - 22589142 ACUCUUCCGAUACUAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACGAGAUCAGCGCCCCUGAUGUGUUCAUUAGGGUGAAAGUAACUCCC .(((..((((.((.((((......)))).)).))))(((....))))))....((.(((((((((....)))))))).)...))....... ( -26.70, z-score = -1.57, R) >droAna3.scaffold_13266 1099448 70 + 19884421 -----------ACUCUUUCGAUACCUUUCGUUUCGGGUGGUCCC----------CGCCACUGAUGUGUUCAUUAGGGUGAAAGUCACUCAC -----------.......(((......)))....((((((....----------((((.((((((....))))))))))....)))))).. ( -19.80, z-score = -1.35, R) >consensus ACUCUUCCGAUACCAAAGCGAUACCUUUCGUUUCGGGUGGUCCCACGAGAUCAGCGCCUCUGAUGUGAUCAUUAGGGUGAAAGUAACUCCC ........(((.((.((((((......)))))).))(((....)))...)))..((((.((((((....))))))))))............ (-20.40 = -21.13 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:29 2011