| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,586,299 – 2,586,401 |
| Length | 102 |
| Max. P | 0.672349 |
| Location | 2,586,299 – 2,586,401 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.78 |
| Shannon entropy | 0.23587 |
| G+C content | 0.45990 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -24.74 |
| Energy contribution | -25.10 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2586299 102 - 23011544 GCAUACGUGAGU-GGGGGCUUCUAUGCACAUGGAUGU---------GGUACAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUG .....((..(((-((((((.......((((....)))---------)((((((....)))))))))).....((((((((....)))))))))))))..))........... ( -35.40, z-score = -2.31, R) >droEre2.scaffold_4929 2627803 105 - 26641161 GCAAACGUGAGU-GGGGGCGUCCGUACACAUAGCUACAC------AUAUAUAAGCAUACAUACGUCCAAUAUUCUGGUCCAUUUGGGCCGGGCCACUAUCGAAAUUUGAAUG .....((..(((-((((((((..(((......(((....------.......))).)))..)))))).....((((((((....)))))))))))))..))........... ( -29.70, z-score = -1.31, R) >droYak2.chr2L 2573948 111 - 22324452 GCAAACGUGAGU-GGGGGCAUCUCUACACAUGGAUAUACAUCUAUAUAUGUAUAUAUACAUACGUUCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUG .....((((.((-((((....)))))).)))).((((((((......)))))))).......(((((((...((((((((....)))))))).(......)....))))))) ( -31.70, z-score = -2.58, R) >droSec1.super_5 754554 103 - 5866729 GCAAACGUGAGUGGGGGGUGUCUGUGCACAUGGAUGU---------GGUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUG .....((..(((((...((((....)))).(((((..---------.((((((....)))))))))))....((((((((....)))))))))))))..))........... ( -33.80, z-score = -1.01, R) >droSim1.chr2L 2544647 102 - 22036055 GCAAACGUGAGU-GGGGGCGUCUGUGCACAUGGAUGU---------GGUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUG .....((..(((-((((((((((((....))))))..---------.((((((....)))))))))).....((((((((....)))))))))))))..))........... ( -36.40, z-score = -1.90, R) >consensus GCAAACGUGAGU_GGGGGCGUCUGUGCACAUGGAUGU_________GGUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUG .....((..(((.((((((((((((....))))))............((((((....)))))))))).....((((((((....)))))))))))))..))........... (-24.74 = -25.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:43 2011