| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,370,096 – 7,370,153 |
| Length | 57 |
| Max. P | 0.966973 |
| Location | 7,370,096 – 7,370,153 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 92.63 |
| Shannon entropy | 0.12710 |
| G+C content | 0.47368 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -17.02 |
| Energy contribution | -18.30 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7370096 57 - 21146708 ACUGAGAAGGUUGGGGUAAGUUGGAUAACAGAGAUUUAACACCCUAACUGUCAGGUG .((((...(((((((((..(((((((.......)))))))))))))))).))))... ( -20.90, z-score = -3.54, R) >droEre2.scaffold_4845 4161058 57 + 22589142 CCUGAGCUGGUUGGGGUAACUUGGAUAACAGAGAUUUAACACCCUAACUGUCAGGUG (((((.(.(((((((((...((((((.......)))))).))))))))))))))).. ( -19.00, z-score = -2.16, R) >droYak2.chr2R 11545841 57 + 21139217 CCUGAGAAGGUUGGGGUAACUUGGAUAACAGAGACUUAGCACCCUAACUGUCAAGUG .....((.(((((((((..((.((..........)).)).))))))))).))..... ( -13.70, z-score = -0.31, R) >droSec1.super_1 4921447 57 - 14215200 CCUGAGAAGGUUGGGGCAAGUUGGAUAACAGAGACUUAACACCCCAACUGUCAGGUG (((((...((((((((.(((((..........)))))....)))))))).))))).. ( -21.50, z-score = -2.72, R) >droSim1.chr2R 5893441 57 - 19596830 CCUGAGAAGGUUGGGGCAAGUUGGAUAACAGAGAUUUAACACCCUAACUGUCAGGUG (((((...((((((((...(((((((.......))))))).)))))))).))))).. ( -21.40, z-score = -3.38, R) >consensus CCUGAGAAGGUUGGGGUAAGUUGGAUAACAGAGAUUUAACACCCUAACUGUCAGGUG (((((...(((((((((..(((((((.......)))))))))))))))).))))).. (-17.02 = -18.30 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:25 2011