| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,367,565 – 7,367,655 |
| Length | 90 |
| Max. P | 0.915327 |
| Location | 7,367,565 – 7,367,655 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 81.43 |
| Shannon entropy | 0.33740 |
| G+C content | 0.38594 |
| Mean single sequence MFE | -20.89 |
| Consensus MFE | -12.48 |
| Energy contribution | -14.04 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7367565 90 + 21146708 GAGUUACAAAAUAGUGGGAAAAAA-UGUGAAUGAUCAGUCAUAUGUUUGCCUAUUCAUUACACAUUUGUGUACCCAGCUCCGCCCACAACU .............(((((...(((-(((((((((..((.((......)).))..))))).)))))))..((.....))....))))).... ( -20.80, z-score = -1.86, R) >droEre2.scaffold_4845 4158801 70 - 22589142 ---------AACAGUGGGUAAAAAAUUUGAAUGAUCAGUCAUAUGCU------------ACACAUUUGUGUACUCAGACACGCCCACAUCC ---------....((((((........(((....)))(((....(.(------------((((....))))))...)))..)))))).... ( -17.80, z-score = -2.18, R) >droYak2.chr2R 11543442 90 - 21139217 GAGUUACAAA-UAGUGGGUAAAAAGUAUGAAUGAUCAGUCAUAUGUUUGCCUAUUCAUUACACAUUUGUGUACUCAGCUCCGCCCACAUCC ((((((((((-(((((((((((..((((((........)))))).))))))))))........))))))).))))................ ( -21.90, z-score = -2.27, R) >droSec1.super_1 4918916 91 + 14215200 GAGUUACAAAGUAGUGGGUAAAAAAUGUGAAUGAUCAGUCAUAUGUUUGCCUAUUCAUUACACAUUUGUGUACCCAGCUCCGCCCACAUCU (((((((......))(((((..((((((((((((..((.((......)).))..))))).)))))))...))))))))))........... ( -25.50, z-score = -3.30, R) >droSim1.chr2R 5890870 87 + 19596830 GAGUUAUAAAAUAGUGGGAAAAAAAUGUGAAUGAUCAGUCAUAUGUUUGCAUAUUCAUUACACAUUU----ACCCAGCUCCGCCCACAUCU .............(((((....((((((((((((......(((((....)))))))))).)))))))----...........))))).... ( -18.46, z-score = -2.00, R) >consensus GAGUUACAAAAUAGUGGGUAAAAAAUGUGAAUGAUCAGUCAUAUGUUUGCCUAUUCAUUACACAUUUGUGUACCCAGCUCCGCCCACAUCU .............((((((.....((((((........))))))..............(((((....))))).........)))))).... (-12.48 = -14.04 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:24 2011