| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,365,351 – 7,365,437 |
| Length | 86 |
| Max. P | 0.610863 |
| Location | 7,365,351 – 7,365,437 |
|---|---|
| Length | 86 |
| Sequences | 10 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.65 |
| Shannon entropy | 0.39935 |
| G+C content | 0.44505 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -13.35 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7365351 86 + 21146708 UGAAGUGUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCGCUACACC--CCACCCACCC------ ....(((..((....((((((...((((....))))(((((.((......)).))))).......)))))).....--.))..)))..------ ( -16.90, z-score = -0.78, R) >droSim1.chr2R 5888671 85 + 19596830 UGAAGUGUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCGCUGCCCC--CCAUCCCCU------- ...((((...(((..(((.(((..((((.((....))..)))).)))...)))..))).)))).............--.........------- ( -15.30, z-score = -0.40, R) >droSec1.super_1 4916689 85 + 14215200 UGAAGUAUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCACUGCCCC--CCACCCCCU------- ...............((((((...((((....))))(((((.((......)).))))).......)))))).....--.........------- ( -14.20, z-score = -0.35, R) >droYak2.chr2R 11541199 89 - 21139217 UGAAGUGUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGUCGCACCUCC--GCCCCUGCCACCU--- ...((((...(((..(((.(((..((((.((....))..)))).)))...)))..))).))))..((.(((.....--.....))).))..--- ( -16.40, z-score = -0.15, R) >droEre2.scaffold_4845 4156606 83 - 22589142 UGAAGUGUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCGCUCCCCC--UCCUCUC--------- ..............(((((((...((((....))))(((((.((......)).))))).......)))))))....--.......--------- ( -16.70, z-score = -1.62, R) >droAna3.scaffold_13266 1078902 94 + 19884421 AUAAGUGUCUGGUCGAGUGGUUUUUAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCUAUCGCAACAACGACCUCCCCUCACCC ....(((...(((((..................((((((((.((......)).))))).)))..(((....)))....)))))......))).. ( -18.40, z-score = -0.93, R) >dp4.chr3 4547513 83 + 19779522 UGAAGUGUCUGCUCGAGUGGUUUUUAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCCACUCUCC--CCACCCC--------- ..............((((((.....(((..((((.((.(((((...)))))))))))..))).....))))))...--.......--------- ( -15.40, z-score = -1.15, R) >droPer1.super_2 4736391 83 + 9036312 UGAAGUGUCUGCUCGAGUGGUUUUUAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCCUCUCUCC--CCACCCC--------- ...((((...(((..(((.(((..((((.((....))..)))).)))...)))..))).)))).............--.......--------- ( -13.50, z-score = -0.66, R) >droWil1.scaffold_180745 778460 94 - 2843958 UCAAGUGUGUGCUUGAGUGGUUUUUAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGUGACGACGAAAUCAACCCCCUGCCCCAC ((((((....)))))).(((((((..(((((..((((((((.((......)).))))).)))...).))))..))))))).............. ( -21.10, z-score = -1.56, R) >droVir3.scaffold_12875 7494970 73 - 20611582 UGAAGUGUUUGCUCGAGUGGUUUUUAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCGUGUGC--------------------- ...((((...(((..(((.(((..((((.((....))..)))).)))...)))..))).))))..........--------------------- ( -13.50, z-score = 0.15, R) >consensus UGAAGUGUCUGCUCGAGUGGUUUUCAUGUCCUUAUGGCUUAUGUAACAUAACUUAAGCUCAUUAUGCCGCUGCCCC__CCACCCCC________ ...((((...(((..(((.(((..((((.((....))..)))).)))...)))..))).))))............................... (-13.35 = -13.30 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:23 2011