| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,340,518 – 7,340,588 |
| Length | 70 |
| Max. P | 0.989737 |
| Location | 7,340,518 – 7,340,588 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 97.14 |
| Shannon entropy | 0.04837 |
| G+C content | 0.41429 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.37 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7340518 70 + 21146708 AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAGGC ..(((((((((((.(.(((.....))).)...)))))))))))....((((......))))......... ( -18.60, z-score = -2.73, R) >droSim1.chr2R 5866802 70 + 19596830 AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCACAGUGAAAUAUCUCGCGGAAAAGGC ..(((((((((((.(.(((.....))).)...)))))))))))....((((......))))......... ( -18.60, z-score = -2.45, R) >droSec1.super_1 4893089 70 + 14215200 AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCACAGUGAAAUAUCUCGCGGAAAAGGC ..(((((((((((.(.(((.....))).)...)))))))))))....((((......))))......... ( -18.60, z-score = -2.45, R) >droYak2.chr2R 11517054 70 - 21139217 AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAAGC ..(((((((((((.(.(((.....))).)...)))))))))))....((((......))))......... ( -18.60, z-score = -2.93, R) >droEre2.scaffold_4845 4130318 70 - 22589142 AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGCGCUCUGCAAAGUGAAAUAUCUCGCGGAAUAAGC ..((((((.((((.(.(((.....))).)...)))).))))))....((((......))))......... ( -15.50, z-score = -1.33, R) >consensus AACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAGGC ..(((((((((((.(.(((.....))).)...)))))))))))....((((......))))......... (-18.00 = -18.20 + 0.20)
| Location | 7,340,518 – 7,340,588 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 97.14 |
| Shannon entropy | 0.04837 |
| G+C content | 0.41429 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7340518 70 - 21146708 GCCUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ........(....)............((((((..((((..((.(((.....))).))))))..)))))). ( -13.90, z-score = -1.41, R) >droSim1.chr2R 5866802 70 - 19596830 GCCUUUUCCGCGAGAUAUUUCACUGUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ........(....)............((((((..((((..((.(((.....))).))))))..)))))). ( -13.90, z-score = -0.92, R) >droSec1.super_1 4893089 70 - 14215200 GCCUUUUCCGCGAGAUAUUUCACUGUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ........(....)............((((((..((((..((.(((.....))).))))))..)))))). ( -13.90, z-score = -0.92, R) >droYak2.chr2R 11517054 70 + 21139217 GCUUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ((.......))...............((((((..((((..((.(((.....))).))))))..)))))). ( -14.00, z-score = -1.29, R) >droEre2.scaffold_4845 4130318 70 + 22589142 GCUUAUUCCGCGAGAUAUUUCACUUUGCAGAGCGCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ((.......))...............((((((..((((..((.(((.....))).))))))..)))))). ( -15.00, z-score = -0.74, R) >consensus GCCUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUU ........(....)............((((((..((((..((.(((.....))).))))))..)))))). (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:21 2011