| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,340,195 – 7,340,288 |
| Length | 93 |
| Max. P | 0.620712 |
| Location | 7,340,195 – 7,340,288 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.58536 |
| G+C content | 0.59054 |
| Mean single sequence MFE | -32.66 |
| Consensus MFE | -15.25 |
| Energy contribution | -14.97 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620712 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 7340195 93 + 21146708 -UAUCGUUAUCGCCGCCGACGGCACAAAUA-------AAUCGCGGCCCCGCUGUCCGCGGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -(((((....((((((.((((((.......-------............)))))).))))))....))----)))..(((((....)))))..............------- ( -31.91, z-score = -0.47, R) >droGri2.scaffold_15245 7213287 98 + 18325388 GCUGUUAAAGCAACGCCGAUGCCGCAAACA---AAAUAUUCGCGGCCUGGGAAUGCUAUGCGUCGUCGUUA-GUCUUCGGCUAU--GGCCGCCAUUACUGCUUC-------- ((.((...((((...((.(.(((((.....---........))))).).))..))))(((.((.(((((.(-(.(....)))))--))).))))).)).))...-------- ( -27.32, z-score = 0.39, R) >droMoj3.scaffold_6496 6438844 97 - 26866924 -GCUUUUAUGCAACGCCGACGUUACAAGCA---AUUAAUUCGCGGCCUGGGAAUGCCACUCGCCGUCGUUA-GUCUUCGGCUCU--GGCCGCCAUUACUGCUUC-------- -((......))((((....))))..(((((---..((((..(((((((((.....)))...((((..(...-..)..))))...--)))))).)))).))))).-------- ( -28.30, z-score = -0.70, R) >droVir3.scaffold_12875 7466669 97 - 20611582 GAUUUUAAAG-AACGCCGAUGUUGCAAACA---AACAAUUCGCGGCCUGGAAAUGCUACGCGCCGUCGUUU-GUCUUCGGCUCU--GGCCGCCAUUACUGCUUC-------- .........(-((.((.(.((((.......---))))....((((((.(((...((...))((((..(...-..)..)))))))--)))))).....).)))))-------- ( -23.40, z-score = 0.61, R) >droWil1.scaffold_180745 744434 109 - 2843958 GAGUCGAGAACAGCAACGCCGUUGCACUCGCAUAAAUAUGAACGGCCUCGUACUCUUCGGCGUCGUCGACAUGUCUUCGGCUC---GGCCGCCAUUAUUGCUUGCUUCUUUC (((((((..(((((.((((((.(((....)))....(((((......))))).....)))))).)).....)))..)))))))---(((.((.......))..)))...... ( -29.70, z-score = -0.03, R) >droPer1.super_2 4710687 90 + 9036312 -CUGUGUAAAUGUCGCCGGCGUUGGCCGAA-------AUUCGCGGCCUGUGAGUCCGCAGCGUCGUCA----AUCUUCGGCUCUCUGGCCGCCAUU---GCUUUC------- -....((((..((.(((((.(..(((((((-------(((.((((((((((....))))).))))).)----)).)))))))).))))).))..))---))....------- ( -35.50, z-score = -2.65, R) >dp4.chr3 4521790 90 + 19779522 -CUGUGUAAAUGUCGCCGGCGUUGGCCGAA-------AUUCGCGGCCUGUGAGUCCGCAGCGUCGUCA----AUCUUCGGCUCUCUGGCCGCCAUU---GCUUUC------- -....((((..((.(((((.(..(((((((-------(((.((((((((((....))))).))))).)----)).)))))))).))))).))..))---))....------- ( -35.50, z-score = -2.65, R) >droAna3.scaffold_13266 1051507 93 + 19884421 -CAUCGGCAAACCCGCCGCCGACGUGAAUU-------AAUCGCGGCCUCGCUGUCCUCAGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -....(((.....(((((.((((((((...-------..))))......((((....)))))))).))----)))...((((....)))))))............------- ( -34.30, z-score = -2.22, R) >droEre2.scaffold_4845 4129996 93 - 22589142 -CAUCGUUAUCGCCGCCGACGGCGCAAAUU-------AAUCGCGGCCCCGCAGUCCGCGGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -..........((((((((((((((.....-------...((((((......).))))))))))))))----)))..(((((....)))))........))....------- ( -36.50, z-score = -1.42, R) >droYak2.chr2R 11516732 93 - 21139217 -CAUCGUUAUCGCCGCCGACGGCGCAAAUU-------AAUCGCGGCCCCGAAGUCCGCGGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -..........((((((((((((((.....-------...((((((......).))))))))))))))----)))..(((((....)))))........))....------- ( -36.50, z-score = -1.46, R) >droSec1.super_1 4892766 93 + 14215200 -CAUCGUUAUCGCCGCCGACGGCGCAAAUA-------AAUCGCGGCCCCGCAGUCCGCGGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -..........((((((((((((((.....-------...((((((......).))))))))))))))----)))..(((((....)))))........))....------- ( -36.50, z-score = -1.38, R) >droSim1.chr2R 5866480 93 + 19596830 -CAUCGUUAUCGCCGCCGACGGCGCAAAUA-------AAUCGCGGCCCCGCAGUCCGCGGCGUCGUCG----GUGUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC------- -..........((((((((((((((.....-------...((((((......).))))))))))))))----)))..(((((....)))))........))....------- ( -36.50, z-score = -1.38, R) >consensus _CAUCGUAAUCGCCGCCGACGGCGCAAAUA_______AAUCGCGGCCUCGCAGUCCGCGGCGUCGUCG____GUCUUCGGCUCUCUGGCCGCCAUUAUUGCUUUC_______ ...........((((....))))..................((((((((.........)).((((............)))).....)))))).................... (-15.25 = -14.97 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:19 2011