| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,303,756 – 7,303,829 |
| Length | 73 |
| Max. P | 0.775162 |
| Location | 7,303,756 – 7,303,829 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 65.16 |
| Shannon entropy | 0.52363 |
| G+C content | 0.54907 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.38 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7303756 73 - 21146708 UUUAUUGAAUUAUGCAAUAUUUGUUGCGCCCCGGGAUG-GGCGUAGUU-CCCCCCGGCAGCGGGUAAUUGCUAUU .............(((((.....((((((((......)-)))))))..-...((((....))))..))))).... ( -22.50, z-score = -0.29, R) >droSim1.chrU 5263494 64 - 15797150 ---------GUGCAGAAUGUUUCUCCCGUUACAGGUUGUAGCGUCAUU--CUCACCGCGGCGGGUGGUCGUUUUC ---------(((.((((((.......((((((.....)))))).))))--))))).(((((.....))))).... ( -17.70, z-score = -1.09, R) >droSec1.super_473 7973 64 + 10543 ---------GUGCAGAAUGUUUCUCCCGUUACAGGUUGUAGCGGCAUU--CUCACCGCGGCGGGUGGUCGUUUUU ---------(((.((((((......(((((((.....)))))))))))--))))).(((((.....))))).... ( -21.20, z-score = -1.73, R) >droEre2.scaffold_4784 25677404 64 - 25762168 -----------GCAGAAUGUUGCUCCCGCUACAGGUGGAAGCGGAAUUUCCCCCCCGCGGCGGGUAAGCGUUCUU -----------..((((((((...(((((..(.((.(((((.....))))).))..)..)))))..)))))))). ( -26.80, z-score = -2.05, R) >consensus _________GUGCAGAAUGUUUCUCCCGCUACAGGUUGUAGCGGAAUU__CCCACCGCGGCGGGUAAUCGUUUUU .............((((((......(((((((.....)))))))......(((.(....).)))....)))))). (-11.94 = -11.38 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:16 2011